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Information for unigene UN43571
| FASTA Sequence |
| Unigene ID: UN43571 | Length: 881 |
SSR | | AAAGTAGCAAAATATTATATTAATCTTCAAATCCCACTTAAACATCAACACCAAGCAAACAAGTTGGAAACATAAACAAGAAAAGA
GCTAGCAGTTTCATAGATAGGATAGGATAATGATGGTAGGATAGATGTGTGATGATATCAAAAACAAGCGGGTGGATTGCTATAAA
AGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACAGAATTCAATCTTTTGGATTGCAAGAGACAACTTCAATA
TCTCCAGGAAAGTAGCGAACCACTGCTCGAAAGGGTTTTGTCTGATTACCATCTTCTTCTGAAGGATCATTGACTTGGAATGAGAT
GTAGAAGGAGAATCCACAAGATAGATGAAAGTTGGCAATCATAATCTTTTCCAGTTCAAAGCTTGTTCCCCTGTCTGCGTTATGTT
TGGTAAGAGCCAGGTTCGCCAACTTCCCTATGAAATCTCTGTTAGTTTCAGGTTCATCAACCATTGTACTGTCATCCAGATCCAGT
GGTTTCCATCCAAAACAGTAACGAAATTTCTTGAAGTCGATTTCATAACCCTACAAAATCTCACCAACAAACCAATAAGAAACTAA
AACCGAATTCACCAACCAAAAAAAATATAAATTAAAAATCACAAACCCCGCCGATCTTATCCAACTCTTGCTCGAACAGTTGCATC
TCCTCGTCGGAGCACTCGTCGGAATCAAAATCCTCTGGACGGCCATTATAGCACGTTGTTTCCTCCATCTTCTGACGCTTCGGTGG
AGGGGATTCGGATCTTTCCATCGCTGGATCGGCAACAATCCAGACAAAGACTTTGCGAGAAAGGAAAAAAAAACCCTAATTTTCTA
TCCAGAGAGTCTTCGTTTTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002873189 hypothetical protein ARALYDRAFT_908406 [Arabidopsis lyrata subsp. lyrata] | 423 | 2e-039 |
| XP_002876181 hypothetical protein ARALYDRAFT_906686 [Arabidopsis lyrata subsp. lyrata] | 382 | 1e-034 |
| NP_196125 cystatin/monellin-related protein [Arabidopsis thaliana] | 292 | 3e-024 |
| NP_196123 cystatin/monellin-related protein [Arabidopsis thaliana] | 273 | 4e-022 |
| XP_002886425 predicted protein [Arabidopsis lyrata subsp. lyrata] | 237 | 7e-018 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FF68 Genomic DNA, chromosome 5, P1 clone:MUG13 | 292 | 2e-024 |
| Q9FF70 Genomic DNA, chromosome 5, P1 clone:MUG13 | 273 | 3e-022 |
| Q58FY9 Putative uncharacterized protein | 207 | 1e-014 |
| Q9CAM2 Putative uncharacterized protein F16M19.11 | 201 | 7e-014 |
| Q84RK1 Putative uncharacterized protein At2g37435/F3G5.14 | 179 | 2e-011 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G05060.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05040.1); Has 40 Blast hits to 40 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 292 | 1e-026 |
| AT5G05040.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05060.1); Has 40 Blast hits to 40 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 273 | 2e-024 |
| AT2G37435.1 cysteine-type endopeptidase inhibitor | 209 | 5e-017 |
| AT1G63190.1 FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63200.1); Has 24 Blast hits to 24 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 201 | 4e-016 |
| AT1G63205.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63200.1); Has 19 Blast hits to 19 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 201 | 4e-016 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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