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Information for unigene UN43618
| FASTA Sequence |
| Unigene ID: UN43618 | Length: 961 |
SSR | | CTAAAACTCCCAAACAGTAAACATAAAAATTTAAAGAACCGGTAAAGATAACATGTTTTAAAGATCAAAGTAGTAGTAGCAGAGGA
AAAAGAAAGAATCCAGAACTAGTTGCCTAAGAACAAATTACAATTTTGCATAGAACTCCCCATTTATCCGATTTGATCTTTGCCAT
GGACGGTTCGAAGTGCCATCACTCACTCAGTTCCTTCCTGAACCTTGGCAGGAGATTTTGAAAGAGACCTGGACCTCGATCACCAT
GGGCAAGCTCAACCCTCAAACGAGAGCCGTCAAAGTTGTACCCGTCACGGCCATCGATAGCATCTTCAGCATCCCGAGGATGCTCA
AACTCAACAAAACAATAACATGGAGGACGAGGTGGAACCTTCAATTCAATATCCACAATGCGGCCATACTTGTAGAAGAGATCTTC
AATCTCAGACTCCCTTATGTCACCGGGCAAGTTACCAACATAGATGGACCGAGAAAACCGACCACTCATTGTTTGCAAAGGTTGTT
AGGTAACTGCAAATAAAAGAAAACAAATCAATAAAGGAACTAAGCTTTATTTCTTAAGGACAAAGAATCTCCACTCAGACAGCTTC
CAAAATCAGCATCGCTGCATCAGCATATAGAAAAGATGATGATGATGATATAAGACCAAAACAATATGAAGCAAACCAAGTGAGAG
CCATCCATGGTAAAGAGCAGTGCTCCACAAGCTCCAAAATTGCTTATTTGCTCCAATGTGCTCCCAAAAGCTATTATAAATTTTTA
GAAATCTATTTTGTTTTCTCCACATCTTCCCCATGATTTAAGCATAAATAAAATAAATACACTGATCTCCCCATTCCCTCTCTAAT
CACTATGAACCATTGCAATGCTCATGTTCCAAGCGCTTTGCCATCAGGGATAAGCAGCACCGGACAAGATTCGGAGGAACCAAGGC
TTTGATAGTTAGATA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002875964 hypothetical protein ARALYDRAFT_906222 [Arabidopsis lyrata subsp. lyrata] | 430 | 3e-040 |
| NP_190512 putative Pre-mRNA splicing factor SF2 [Arabidopsis thaliana] | 422 | 3e-039 |
| AAG52185 putative splicing factor; 53460-55514 [Arabidopsis thaliana] | 422 | 3e-039 |
| CAB62448 PRE-MRNA SPLICING FACTOR SF2-like protein [Arabidopsis thaliana] | 422 | 3e-039 |
| NP_001078264 putative Pre-mRNA splicing factor SF2 [Arabidopsis thaliana] | 422 | 3e-039 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O22315 Pre-mRNA-splicing factor SF2 | 341 | 3e-031 |
| Q0VCY7 Splicing factor, arginine/serine-rich 1 | 259 | 9e-022 |
| Q5ZML3 Splicing factor, arginine/serine-rich 1 | 259 | 9e-022 |
| Q07955 Splicing factor, arginine/serine-rich 1 | 259 | 9e-022 |
| Q6PDM2 Splicing factor, arginine/serine-rich 1 | 259 | 9e-022 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A2RVS6 At3g49430 | 422 | 2e-039 |
| A8MR30 Uncharacterized protein At3g49430.2 | 422 | 2e-039 |
| Q9CA06 Putative splicing factor; 53460-55514 | 422 | 2e-039 |
| Q9SCL3 PRE-MRNA SPLICING FACTOR SF2-like protein | 422 | 2e-039 |
| B9I218 Predicted protein | 420 | 3e-039 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G49430.1 SRp34a (Ser/Arg-rich protein 34a); RNA binding / nucleic acid binding / nucleotide binding | 422 | 1e-041 |
| AT3G49430.2 SRp34a (Ser/Arg-rich protein 34a); RNA binding / nucleic acid binding / nucleotide binding | 422 | 1e-041 |
| AT1G09140.1 SF2/ASF-like splicing modulator (SRP30) | 357 | 4e-034 |
| AT1G09140.2 SF2/ASF-like splicing modulator (SRP30) | 357 | 4e-034 |
| AT1G02840.1 SR1; RNA binding / nucleic acid binding / nucleotide binding | 341 | 3e-032 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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