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Information for unigene UN43711

FASTA Sequence
Unigene ID: UN43711Length: 750 SSR 
TTTTCTCAGCAAATCCTTAAACCACAATGGGTTACGACTTCAGGAACAAGTCAGGTCCCTCCTACGGCCGCCCTATGTATCCATCC
CCTTCTCCATCATCTATGTACACCGGTCCTCCCGGATACCCAAAGATCGGCGGTGGCCAACCGTTTTTCCCTCCCCCGCCGGAGAG
AACCCCCTCGTTTCAACACAACCCATCTCCTTCTTCATCTGGATTAGGAATCAAGGTGACTCTCAAGCCTGACTATCGTATCACTC
CTCCGCCTCCGTTGTTGCCTCGAGTTGGAGATGTTCCTCGGAGCAGCTTTCAGTTCGATTTCGGACTAGAAAGGAAGGTTCTTGCG
GAGGCTGAGAAGGATAATCCTGATTGGAGCAAGTTTGGGTCCGACCATCCTCCTCCTCCTCCTCCACCGGCGAACTTTTCGCAACC
GCCGCCGGCTAACTTTGCACAACCACCACCGGCACATTCAATGGGTGTAGATCCTGTAGTGATGAAATATGCTGGGCTAAACCGAG
AAGCTGTCAACATCGCTGTTGCAAACTATGGTGATAATCCAACAAAGGTTCATGAATTTGCAAATGGGTTCAGTGCGATAAGGGAG
ATGGGTTTCCCAACTAACGCTGTTGCAGATGCTCTCTTCATGTTTGAGAACGACACTGAGGAGGCATTGTCGCATTTGCTCCATGG
TTCTTCCTGAACTTTTTAGACTTTCAACTTATCCTTCTATTAGTGTGTATAAGTAAAACATC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002864236 hypothetical protein ARALYDRAFT_918411 [Arabidopsis lyrata subsp. lyrata]8065e-084
XP_002267522 PREDICTED: hypothetical protein [Vitis vinifera]5252e-051
AAK55708 AT5g53330/K19E1_13 [Arabidopsis thaliana]4696e-045
NP_568790 Ubiquitin-associated/translation elongation factor EF1B protein [Arabidopsis thaliana]4696e-045
BAB09795 proline-rich cell wall protein-like [Arabidopsis thaliana]4652e-044

Swiss-Prot top hits (Blast detail)Scoree value
O48809 Leucine-rich repeat extensin-like protein 21361e-007

TrEMBL top hits (Blast detail)Scoree value
A5APR3 Putative uncharacterized protein5251e-051
Q8LG11 Proline-rich cell wall protein-like4694e-045
Q93VW9 AT5g53330/K19E1_134694e-045
Q9FK09 Proline-rich cell wall protein-like4651e-044
Q5WA93 Os06g0160400 protein4292e-040

Arabidopsis top hits (Blast detail)Scoree value
AT5G53330.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940); Has 28 Blast hits to 28 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 2; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).7507e-080
AT1G62440.1 LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2); protein binding / structural constituent of cell wall1361e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
72  100%

Unigene MembersMember information