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Information for unigene UN43728

FASTA Sequence
Unigene ID: UN43728Length: 865 SSR 
GCAGTATGATCTTGTTTACTTGTCCAAAAGAGCAAAACAAAACCATTCATCAAACTCTTTTGTTTACAAAAGTTGAATCCTTTCTA
AATAAAAATCTCCTTCCAATCATTGCCGCTGCTTCTTCATACATAATAATCCTTGTCACCGCTTTCTTGATATGCAATCAGAGAAT
GTGTCAACGAGCTGCTCAGCTAAAGCTACCGAATCGTCCTGGAAAGCATCAACGAATGTCTTGACAACATTTATCTCCTGAGCACT
GGCTTTTAAGCTATACCAAGTCAGAAACTCCTGTCTGAAACTCTTCTCAACGTGACCTGAACACTCGAGCTGTCGCATAATCTTCA
CGCAATCCTCCAACCCAAAACCGCAGCTTGTTGAACTCTTACCGTTGACCGCCGCCTTCTCTGAAACAGTTTCTTCTTCTTCCTCT
TTTGTGCTCAAGCTACTCACAAAAGCTGCTTCTCCTTCTTCTTCTTCTTCTCCAAGGGTTCTTGTCAAGACTTTGGTATCTTGGAG
GGATTTCAAAGCAGAAGAGCAAAGATCCTTCACTTTTGTCGCTGAGCCAAGCCTGTTTACGTTTCCTCTACACATTGCCGATGGAA
GATCAGTAAGAGGACCACACAGCTCAGTTTCTAAACTCTTCACAGCTTCCTCCACGGTCTCAGATAGTTTTCTGTACTTCTCCGTG
CCCTTGAGAAGCTTCTGAGCCAATACAAGACGGTAACAAAGCACGTCTACGCTTCTGGTTTCCTTTGCGATCAACAGTTGCTTCTT
CCAACACTCAAGCAAGCTGTTTGTTTTGCCACAGGAGACACAGTGGAAGCATCCATCAACATGATGACTTGGCTTATCTTCCTTGA
GACCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_179478 vernalization5/VIN3-like protein [Arabidopsis thaliana]3802e-034
ABL01540 VIN3-like 3 protein [Arabidopsis thaliana]3802e-034
AAP22497 hypothetical protein At2g18880 [Arabidopsis thaliana]3783e-034
XP_002886255 hypothetical protein ARALYDRAFT_900357 [Arabidopsis lyrata subsp. lyrata]3783e-034
NP_194749 vernalization5/VIN3-like protein [Arabidopsis thaliana]3675e-033

Swiss-Prot top hits (Blast detail)Scoree value
Q9FIE3 Protein VERNALIZATION INSENSITIVE 33126e-028

TrEMBL top hits (Blast detail)Scoree value
A1DW35 VIN3-like 3 protein3801e-034
Q5BPT4 Putative uncharacterized protein3801e-034
Q84N40 Putative uncharacterized protein3782e-034
Q3E9U4 Putative uncharacterized protein At4g30200.33674e-033
Q8GUH6 At4g302003674e-033

Arabidopsis top hits (Blast detail)Scoree value
AT2G18880.1 VEL2 ((VERNALIZATION5/VIN3-LIKE))3807e-037
AT4G30200.1 Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.3672e-035
AT4G30200.3 Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.3672e-035
AT4G30200.2 Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.3672e-035
AT5G57380.1 VIN3 (VERNALIZATION INSENSITIVE 3); protein binding / zinc ion binding3125e-029

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  100%

Unigene MembersMember information