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Information for unigene UN43744
| FASTA Sequence |
| Unigene ID: UN43744 | Length: 431 |
SSR | | GGTCATGACATGTTTGTCCTTCCTTTTCTTAACACGAATGTCATCATCCTCACTGTCGCTGCTGCTAGAATACCTCTTACGTGACT
TCCTCTTCTTCTTCTTGCTCAGTTTAGACCTACGCTGCTTCTCTCTCCTGTAATCATCTTCAGAACTAGAAGAAGAAGAAGAGTAG
AAAGAAGAATCTGATTCACTCTCATCAGAAGAGTCTTTAATCCGACGAGTCTTACTTCTCTTCGTCTTCTTCTTATTCTTCTTCTT
CACCGATCGCAACTTAGAGGGATCTTCTTTAGAGCGTTTGAGTTTCTTAGAGGAAGATGATGATTTGCCCATTCTGCTCTCCCTCA
GTGAATCCGCTTTCTCTTCTTCGAATCTGTTCAAAAAGGGGATTAGGTTTGAGAACTGCACTGTTATCTGTCTCTTTTCTCTTGCC
C
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002866006 hypothetical protein ARALYDRAFT_918499 [Arabidopsis lyrata subsp. lyrata] | 263 | 1e-021 |
| NP_200204 uncharacterized protein [Arabidopsis thaliana] | 252 | 2e-020 |
| XP_001602537 PREDICTED: hypothetical protein LOC100118605 [Nasonia vitripennis] | 179 | 6e-012 |
| XP_003208514 PREDICTED: NKAP-like protein-like [Meleagris gallopavo] | 167 | 1e-010 |
| XP_003431010 PREDICTED: NF-kappa-B-activating protein-like [Ornithorhynchus anatinus] | 167 | 1e-010 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q54V71 Uncharacterized protein DDB_G0280579 | 164 | 2e-011 |
| Q4V7C9 NF-kappa-B-activating protein | 154 | 3e-010 |
| Q9VJ87 Pre-mRNA-splicing factor CWC22 homolog | 152 | 5e-010 |
| Q9D0F4 NF-kappa-B-activating protein | 152 | 5e-010 |
| Q9DA19 Corepressor interacting with RBPJ 1 | 149 | 1e-009 |
| TrEMBL top hits (Blast detail) | Score | e value |
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| Q9FN33 Genomic DNA, chromosome 5, TAC clone: K19P17 | 252 | 1e-020 |
| D1Z9A1 Whole genome shotgun sequence assembly, scaffold_11 | 168 | 7e-011 |
| Q5ZIJ3 Putative uncharacterized protein | 165 | 2e-010 |
| C5E0P8 ZYRO0G14608p | 163 | 3e-010 |
| Q54BM0 Putative uncharacterized protein | 158 | 1e-009 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G53930.1 unknown protein | 252 | 1e-022 |
| AT5G53800.1 unknown protein | 150 | 9e-011 |
| AT5G49400.1 zinc knuckle (CCHC-type) family protein | 133 | 9e-009 |
| AT3G49601.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf21 (InterPro:IPR013170); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37820.1); Has 58354 Blast hits to 32469 proteins in 1203 species: Archae - 56; Bacteria - 5471; Metazoa - 26539; Fungi - 6511; Plants - 2874; Viruses - 282; Other Eukaryotes - 16621 (source: NCBI BLink). | 129 | 3e-008 |
| AT3G59800.1 unknown protein | 119 | 4e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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