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Information for unigene UN43763
| FASTA Sequence |
| Unigene ID: UN43763 | Length: 738 |
SSR | | GATTTCGTAATGTTTATTGCTCATATCATTCATATGTATATCTAACAAACACATGAAAGCGTGGCAAATCTAATGTTAGCAAGGGT
GAAAAAGAGCAAATTTAAAAGTACAGGGGTGAAAAGTCAAAAAAAAAAGACACAAGGAGAGGGAAAAGAAGCCGTCTCCCGTCTCT
CTCTATAGTTCCGCCACGGGACAGTACTCGCTGTGGAAGTCATGAACACCCGAAGCAGCCCACAGCCGTTGATTAAACTCTTCTTG
CATCTCATCGGGAACAAACGGCGTCCTACAGAGAGGACACGTCTTCTGATCGTGATCCATCCAACGGTCGAGACAGCTCCGGTGGA
ATATGTGCCTGCAGTTTCTCAGCCACCGGATCTCTTGCTCTCCTTCGAACTCGTAGAGACAGACGGCGCAGCTTTCCGGCAGATCC
TCGCCTGAGACGTCTTCGAACTTGACGACGGGCAAGATCTCGCGGATTAGGAGGGCGGAGAAGGGGGAGCGGAGTTCGGTGGGTGT
TCGGGTCGGGTGAGATGTGTAGTCGGGCCAGGGTTGGTCCATTTCGAGGAAGTCGGAGAGACCCAAGAAGCGGAAGAGAGAGAAGA
GGACGGTTCTGATGAAACTGAGTAGGGAGAGTGTTTGTTCGAAGAGCTTCGGGATGAAGACCTCTGTGTAACCTACGGGGAAGCCC
ATTGGAGCTAGAGAGAGAGATAGAGAGAGAGAGAGTGAGCTCTGGTTAAT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_191705 brassinosteroid-responsive RING-H2 [Arabidopsis thaliana] | 814 | 6e-085 |
| XP_002278353 PREDICTED: hypothetical protein [Vitis vinifera] | 606 | 8e-061 |
| XP_002320813 predicted protein [Populus trichocarpa] | 597 | 8e-060 |
| XP_002302597 predicted protein [Populus trichocarpa] | 595 | 1e-059 |
| XP_002511894 zinc finger protein, putative [Ricinus communis] | 581 | 6e-058 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SUS4 RING-H2 zinc finger protein RHA1a | 198 | 7e-015 |
| Q940Q4 RING-H2 finger protein ATL4K | 160 | 2e-010 |
| Q8GW38 RING-H2 finger protein ATL1D | 159 | 2e-010 |
| Q9P7E1 Uncharacterized RING finger protein P4H10.07 | 158 | 3e-010 |
| Q5EAE9 RING-H2 finger protein ATL5C | 157 | 4e-010 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9XF92 BRH1 RING finger protein | 814 | 4e-085 |
| B9RDV5 Zinc finger protein, putative | 598 | 5e-060 |
| B9I8M9 Predicted protein | 597 | 6e-060 |
| B9GQB6 Predicted protein | 595 | 1e-059 |
| C6T166 Putative uncharacterized protein | 534 | 1e-052 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G61460.1 BRH1 (BRASSINOSTEROID-RESPONSIVE RING-H2); protein binding / zinc ion binding | 818 | 9e-088 |
| AT1G63840.1 zinc finger (C3HC4-type RING finger) family protein | 444 | 2e-044 |
| AT5G41400.1 zinc finger (C3HC4-type RING finger) family protein | 293 | 7e-027 |
| AT4G00305.1 zinc finger (C3HC4-type RING finger) family protein | 241 | 7e-021 |
| AT4G11370.1 RHA1A; protein binding / zinc ion binding | 198 | 7e-016 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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