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Information for unigene UN43834
| FASTA Sequence |
| Unigene ID: UN43834 | Length: 717 |
SSR | | GCACACCAAAGTAGACAACTATAATTTTTCCCTTCTTGCAAGATTATAACAAGCCAAACAGCATTTTGGCTCCAGTTTGTTTTTTC
ATAGTGCATATAGCTTTTTATCTCTACAAACAAACTCAACCCAAAACAAAAAAAGGAAAAGAAAGGGATGAGAAGAGAGACAAGTA
GGTACATAAAGAGAGAGCCAACGTGTTGCAGTGTCAAGATTCAAGCTTTAGAGATACAACTCGAGACTGTCGGTTGCGCTTAGCCG
CCTTAACAAAGACTACCGAGAGACAAGACGGTGCCCACCATGGCCTTCGAACTCTCTGCTCGCCTTTCAAGCAAGCCACTTTGATC
CTTCTGAGTTCTTTGCAGAGGGCGATGAAGTCCCCCCATTTCATGTGATGCCTCCTTATGAAATGAAGGATCTGTTCGGTTGTAAA
CACAGACATGCTTTCTAGATATTCTCCGTTGACCCCGTTTTCTTTGAAAATCAGGCGGTAGCTCCCAAGGTTTATCTCCTCAAGCC
AAGATCCAACATCCTCAACAGTCCATATGAAGAAATCAAGAGGCAGGTGGATGATGATGATGATGATCTCTGCTGCTCATAGTCGT
CGTCTCCTCGAGGAGACAGCTGTTAAAGATCTGAAATTCAAGCTTTGATTTTTAGGGTTTCAATAGCGAGCGAGAGAGAGAGAGGA
GACGATGATAGGTTGGGGACAAATGGGCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAF13094 unknown protein [Arabidopsis thaliana] | 608 | 4e-061 |
| NP_566319 Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana] | 608 | 4e-061 |
| XP_002882548 hypothetical protein ARALYDRAFT_896947 [Arabidopsis lyrata subsp. lyrata] | 608 | 4e-061 |
| NP_001066883 Os12g0514600 [Oryza sativa Japonica Group] | 564 | 5e-056 |
| EEC69378 hypothetical protein OsI_38513 [Oryza sativa Indica Group] | 564 | 5e-056 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q93VV3 At3g07760/F17A17.10 | 608 | 3e-061 |
| Q9S7Y5 F17A17.10 protein | 608 | 3e-061 |
| B8BM58 Putative uncharacterized protein | 564 | 4e-056 |
| Q0IN13 Os12g0514600 protein | 564 | 4e-056 |
| B3XZN9 Downward leaf curling protein | 554 | 5e-055 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G07760.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sterile alpha motif SAM (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif homology 2 (InterPro:IPR011510); Has 31 Blast hits to 31 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 19; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | 609 | 1e-063 |
| AT3G07760.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sterile alpha motif SAM (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif homology 2 (InterPro:IPR011510); Has 31 Blast hits to 31 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 19; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | 609 | 1e-063 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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