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Information for unigene UN43858

FASTA Sequence
Unigene ID: UN43858Length: 1160 SSR 
GGAACAGAATATTCTTCTCGCAAGTTCCAGTTGCGACCATTAACACAGACAAAACAAGAATAGTTTTACATATTGAAATAAGCGAA
ACAAAATGAGACTCAAAAAGAGAAGCAAAGGAAACAATGAGAATAAGTGAGTGTTGATAAATGATCATCATTCATCGTCTGAGTAC
TCAAACTTAACTGAATGTGACTGAAGATCGATCTCTCCTCCTCTGTAGCTTCCTCTTTTCTTCTTCGTCTTCTCATGTCGGAAACC
CCTTCCTCTGACTTGCCCTAAAACCTCTTGAGCTTTAGCACCATAACCCGAATCAGCACCACCCTTGGCCCAATAAGAGTTGTCTT
TAAGCCTATCGTCAGTGAACACAACTTCCTCAACGTTTACTCTCTGAAACGGTTTCTTCGGCTCTTTAGAGTCAGAAAGCCCCTTT
CCAGACTTCTTATTAGTTGATTTTGTTTCAACGTTACCGTTCTCCTCAACATCAGTTTGCTTAACAGGTGTTTCTTGAACATCCAT
ATCATCATCATCCTCTGTCTCTTCTTTTGTCTCTTGTTCAGGCTCTGATCTTTTTCTCTTCTTGGAAACTCTCTCCTCATCACCCA
AAGTCTCAGCATCGGCTGCTTTCGACTTGGTCTTCTTCTTCTTCTTCTTTTTCTCTCTCTCTTTCACTCCATCTTCGATCTCACCA
TCAGTCTCTTTAACCTCCTCCTCCTTAGTTACCTCCACCTTACTCTTCTTCTTCTTCTTTTTCTCCTTCTTTACTTCCTCCGCAGC
TTCTTTCTTTTGATCATTAGATCCATTCTTCTCAACTTCATCTTCCCCCTCCACAGCTTCTGGATTGCTCTTGTTCAAAAACACGC
CGTAAACTCCCTCTAAATCCGGCAACTCACTATCCAATTCCTTCTTCTCGATTTCGGCTTCGGAGAGGAGTTTCTTAAAGCATTTA
GAGAACCCACATCGGTCCAAGTACTGAGCTATCGAACGGAGAAGGAGAGCCTTCTGCTCCGATTTCAAGCTCAAGGCTTTGCTCTC
TTTCGCCATAATAACCGGTCTAGAGATCAACACTTGGCGAGGCGTGAGAGCTAAGAGGGCTGGGTCTAAGGTGTTTCGAGAAGGTT
CCGTTGCTAGGGTTTTGGGCATATGAAGCTCGTGAGCTTTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002866185 hypothetical protein ARALYDRAFT_495806 [Arabidopsis lyrata subsp. lyrata]9403e-099
NP_200522 uncharacterized protein [Arabidopsis thaliana]5263e-051
AAM61154 unknown [Arabidopsis thaliana]5263e-051
AAK74044 AT5g57120/MUL3_6 [Arabidopsis thaliana]4923e-047
XP_002262877 PREDICTED: hypothetical protein [Vitis vinifera]4799e-046

Swiss-Prot top hits (Blast detail)Scoree value
P41777 Nucleolar and coiled-body phosphoprotein 12609e-022
Q14978 Nucleolar and coiled-body phosphoprotein 12563e-021
P32583 Suppressor protein SRP402009e-015
P36044 Protein MNN41757e-012
Q55FI4 Nucleolar protein 581712e-011

TrEMBL top hits (Blast detail)Scoree value
Q8LFX8 Putative uncharacterized protein5262e-051
Q9LU74 AT5g57120/MUL3_65262e-051
Q93WC7 AT5g57120/MUL3_64922e-047
C0P7F1 Putative uncharacterized protein4591e-043
A2ZMP5 Putative uncharacterized protein4402e-041

Arabidopsis top hits (Blast detail)Scoree value
AT5G57120.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 90949 Blast hits to 45608 proteins in 1620 species: Archae - 300; Bacteria - 8281; Metazoa - 37603; Fungi - 8095; Plants - 3374; Viruses - 548; Other Eukaryotes - 32748 (source: NCBI BLink).9373e-101
AT1G56660.1 unknown protein1854e-014
AT5G60030.1 unknown protein1837e-014
AT3G57150.1 NAP57 (Arabidopsis thaliana homologue of NAP57); pseudouridine synthase1594e-011
AT5G65900.1 DEAD/DEAH box helicase, putative1551e-010

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
112  100%

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