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Information for unigene UN43910
| FASTA Sequence |
| Unigene ID: UN43910 | Length: 746 |
SSR | | CGACTTTATAAGTTTCCAAAGTAACTAGAGCAAAACATTCTACACATGAAAATACGACACAAGAACAGACAATAAACACACAACAA
GATAAATAAAACGTTAACAAATAAAACAATAAAATTTATACTGTATGTTTTTATAACCCAAAGAGAAGATATTATTGCTCACTTCT
CAACAGTTGATTCCACATTCCAGGATGTCCGGGCCAGTGACTCTTTTAGTGAAGGGATCGATCCTAACCCACAACAGGGTAGCCTA
ACTCAACGGTCGCTTCATCAGCGAAGCCATCCTCGTCTTTATCACCGGGAATAGCAGGACTCCCCTTGTGCCTCTTGTAAGTGGTT
TTGCACTGAGGACAAGATTGATTCCCATCCTTCCTCTCGAATTCATAGCAAGGCCTGCAAACCGGGAATCCACAAACATCACACGC
CACAAAACGATCACCATCAACAGTCTTGCCTACATTGTCACTACAGATCTGGCATATCTGGCCACCACCACCACCAACGCTCTTCA
TCGGCTTCCCCGCGGTTTCTCCTTCGGATTCCATCGTCGTCGCTTACTTCCGAATCGTCAGGGGAGAGTTCAAATCATGAGATCTG
AAGATGAAGTGTAGTCGCGGTGTGACTCTTCAGATCTCTCTTCTGAATCTGCGATTCTCAGAGAGTATATGTAAATGTAAGTGAGG
AGGACGAATCTTAAGATGGCTTACGATATGCAAAGCTGCTACTTTGTCTCTGCTCCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ACS68192 cellulose synthase 3.1 catalytic subunit [Brassica napus] | 488 | 4e-047 |
| BAJ33658 unnamed protein product [Thellungiella halophila] | 470 | 5e-045 |
| NP_196136 cellulose synthase A catalytic subunit 3 [UDP-forming] [Arabidopsis thaliana] | 450 | 1e-042 |
| AAC39336 cellulose synthase catalytic subunit [Arabidopsis thaliana] | 450 | 1e-042 |
| XP_002873198 hypothetical protein ARALYDRAFT_487306 [Arabidopsis lyrata subsp. lyrata] | 437 | 3e-041 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q941L0 Cellulose synthase A catalytic subunit 3 [UDP-forming] | 450 | 4e-044 |
| Q84ZN6 Probable cellulose synthase A catalytic subunit 8 [UDP-forming] | 342 | 1e-031 |
| A2Z1C8 Cellulose synthase A catalytic subunit 9 [UDP-forming] | 325 | 1e-029 |
| Q69P51 Cellulose synthase A catalytic subunit 9 [UDP-forming] | 325 | 1e-029 |
| A2XN66 Probable cellulose synthase A catalytic subunit 2 [UDP-forming] | 324 | 2e-029 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9HNP9 Predicted protein | 400 | 4e-037 |
| Q8H2C6 Cellulose synthase | 399 | 5e-037 |
| C6G908 Cellulose synthase A (Fragment) | 396 | 1e-036 |
| B9GFE1 Cellulose synthase | 394 | 2e-036 |
| B9T1P7 Cellulose synthase A catalytic subunit 6 [UDP-forming], putative | 390 | 6e-036 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G05170.1 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1); cellulose synthase/ transferase, transferring glycosyl groups | 464 | 1e-046 |
| AT4G32410.1 CESA1 (CELLULOSE SYNTHASE 1); cellulose synthase/ transferase, transferring glycosyl groups | 310 | 7e-029 |
| AT5G09870.1 CESA5 (CELLULOSE SYNTHASE 5); cellulose synthase/ transferase, transferring glycosyl groups | 300 | 1e-027 |
| AT5G17420.1 IRX3 (IRREGULAR XYLEM 3); cellulose synthase | 298 | 2e-027 |
| AT5G64740.1 CESA6 (CELLULOSE SYNTHASE 6); cellulose synthase/ transferase, transferring glycosyl groups | 292 | 9e-027 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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