Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN43920

FASTA Sequence
Unigene ID: UN43920Length: 534 SSR 
AATAAATTGAATATGGAAGAAGAGGAATCATCATAATCTGATGGTAAACAACAGAGATTCAATCTCCAGGAGTAATCATCATCATG
AATCCATGATCATAATCAAGACAAAAAAACATAAATCATGAGCAAATTAATAACCATACTCGGGAATTTTATCCACACAAAAAAAA
ACAAAAACTGAAAATGAAGAGACAAATCAGAAGAAGCTGTAGGAAGAGGACGCATCTAGAGGATGAATGAGGTGAGTCAGCACCAA
CGCCACCACCATTAGCAGATATGCAATCCCTTGATCTATCGATGTCCCATCACTGGTCGGAGCAGGAGCGGGAGCTAGAGATTGAG
CGCTGGCGAGAGACGAGATGACGGCGAAAACAAATGTGAATAACGCGAAACCAGTAACGTAACTCCTTGACGCCATCTCTCTCTCT
CTCTCTATGTTTCTTTTGATCCGACGAAAGAAAGAAGCTTGCCGGAGTATCTGCAGAGGCGGCGAGACAGACCGAGGAGGAAAGAG
AAACAGTGTGAGGAATCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_566070 arabinogalactan protein 16 [Arabidopsis thaliana]3232e-028
NP_191723 arabinogalactan protein 20 [Arabidopsis thaliana]2812e-023
XP_002878394 hypothetical protein ARALYDRAFT_907707 [Arabidopsis lyrata subsp. lyrata]2345e-018
XP_002532657 conserved hypothetical protein [Ricinus communis]2336e-018
ACF81917 unknown [Zea mays]2255e-017

Swiss-Prot top hits (Blast detail)Scoree value
O82337 Arabinogalactan peptide 163231e-029
Q9M373 Arabinogalactan peptide 202819e-025
Q9FK16 Arabinogalactan peptide 221653e-011

TrEMBL top hits (Blast detail)Scoree value
B9T338 Putative uncharacterized protein2334e-018
B4FIH4 Putative uncharacterized protein2254e-017
A9PBL3 Putative uncharacterized protein2236e-017
A5BTA7 Putative uncharacterized protein2211e-016
B6SPA0 AGP202147e-016

Arabidopsis top hits (Blast detail)Scoree value
AT2G46330.1 AGP16 (ARABINOGALACTAN PROTEIN 16)3241e-030
AT3G61640.1 AGP202827e-026
AT5G24105.1 AGP41 (ARABINOGALACTAN-PROTEIN 41)1861e-014
AT5G53250.1 AGP22 (ARABINOGALACTAN PROTEIN 22)1653e-012
AT2G46330.2 AGP16 (ARABINOGALACTAN PROTEIN 16)1626e-012

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
112  100%

Unigene MembersMember information