RadishBase

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Information for unigene UN44004

FASTA Sequence

Unigene ID: UN44004	Length: 932	SSR
AAACATAATTTCAACTGATATTAAACCCATCCGCATAATGTAACACATAACAAAAATGTATCATCACTGATCCAAACGATATGAAA CTTGTAAAACAATTCAAGATTGCAAAGTTCTTAAACAAAGAGAGCGAGAAGTCATTGAAAGCTCAAACAATGGATGGATATAAAGC AGCCATGATGGTTTTATTGATATGGCATGTAACGCATTGGCCTTCTGAACCTTGGAACTTTCCCATATCCATATGGAGAATACATA TACGCAGACATGAAAGGTCTGCGGAAGCCCATGTACGGGTTGAATCTTCTACCGCGGAACTGTTTCAATCCAGGAACGTTTGTTCT CTTAGGCATCACCTACAAATTTTCAGACAATGGTAAAAGTGTTTTGGTCTTAGTGGGTTATAGTAAGAACCAAGAAGAAGCTTTTG TGTACCTTTATCTGACGACCATGTAACTCTGATTCGTTCAGTTGTAGCGCCTCTTGTATAGCTTCAGCTTCCACAAACTCGACATA AGCGAACCCCTTTGGCTGCCCAAACTTGTCTGTCAGAATTGTCACCCGGTGGACTGTGCCGCATGATTGGAAGGGTTGCTGCACTT CTTCAGGTGTACAAGCGTAATCAACATTGCCAACAAAAACAGAGCGAGCATCCACCTCCTCTTTGCCTGCTTGATCTGCTGCTACA GTACCAGCATCTTGAGGTCCCATATCCTTCTCAACCTTGGCCTGCATCTCACGAAGAGTAGCAGCTTCGTCCTCTATCTCTTTCAA TCGCTTCTTCATCTCATCCAACTCCTTAGCGGCATCATCATCAGCGGCAGTCATGTCCATGTCTCCATCCATCTCTCCGACGTCCG GAATCTCTTCGCCGTATACCTCGTGTTCCTCTTCCTCCATCGCCTCTCTCTCTCTCTCCCTCTCCGTCGCCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ABL97957 poly(A)-binding protein II-like [Brassica rapa]	708	2e-072
NP_201329 RNA recognition motif-containing protein [Arabidopsis thaliana]	706	3e-072
XP_002866661 polyadenylate-binding protein family protein [Arabidopsis lyrata subsp. lyrata]	706	3e-072
ACU19123 unknown [Glycine max]	650	9e-066
ACU24426 unknown [Glycine max]	648	2e-065

Swiss-Prot top hits (Blast detail)	Score	e value
Q9DDY9 Polyadenylate-binding protein 2-A	335	1e-030
Q7ZXB8 Polyadenylate-binding protein 2-B	334	2e-030
Q6NVP7 Polyadenylate-binding protein 2	330	5e-030
Q28165 Polyadenylate-binding protein 2	327	1e-029
Q86U42 Polyadenylate-binding protein 2	327	1e-029

TrEMBL top hits (Blast detail)	Score	e value
A1YMZ8 Poly(A)-binding protein II-like	708	1e-072
Q9FJN9 Poly(A)-binding protein II-like	706	2e-072
C6TBC1 Putative uncharacterized protein (Fragment)	650	6e-066
C6TND4 Putative uncharacterized protein (Fragment)	648	1e-065
B9H4R7 Predicted protein	642	5e-065

Arabidopsis top hits (Blast detail)	Score	e value
AT5G65260.1 polyadenylate-binding protein family protein / PABP family protein	706	1e-074
AT5G10350.2 polyadenylate-binding protein family protein / PABP family protein	619	1e-064
AT5G10350.1 polyadenylate-binding protein family protein / PABP family protein	619	1e-064
AT5G51120.1 PABN1 (POLYADENYLATE-BINDING PROTEIN 1); RNA binding / poly(A) binding / protein binding	503	4e-051
AT1G74230.1 GR-RBP5 (glycine-rich RNA-binding protein 5); ATP binding / RNA binding	123	5e-007

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	2			100%

Unigene Members	Member information