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Information for unigene UN44056
| FASTA Sequence |
| Unigene ID: UN44056 | Length: 756 |
SSR | | GGTTTCAACAAAATGCACATCAAATTGATCACAACAAAAGCTTTAGGACAAACACACTTTGCTCCATTGTATTAAATAGAGAATCA
GTCTTCAAATATCAGATCCAACGAGAAATACACACACTTTGCAAAGCAACTGAATAACAACAATAAAGGAGCGGTCACAACCAATT
ATACAATGCACAATAATGTACAAAAGCTTCAGAGAAGGACTCACTAATGGGCCATAAGCCATGAGTGCACTCATACACGAGACAGA
GATAGATAGAGAGAGAGAGATCACAGAGGGTTTAGGGCACACCACAGACAATCTTCCCAACAGCAACAGTCAAAGCAGAACATCTG
GCTCGGTTAAACTTCCAGAATAGTTAACTTTACAACATGATGGGAACTCAAGACCAGCTTCCCTGCATCTTACTTCAGTCACATGC
GGAAGAGACCTTACATCCAAATACTCCAAAGAGCTGCATTTCTCCAACAGCTTGCCTATCCCTGCAACTGTGATCTTAGGACAGTT
GCTCACCTTCAAAACCTTCAATCCCAAAACATCTTCGCTCCCTAATTCCCGGAAAGCACTGTCTGTCACCTCTTCGCAGCAACCGA
TATCAAGAGCCTCCAAGTTCTTGCACTTCCTCAGAACGCAGGTGAGGGAAGAGTCAGACACATTCAAGCACCAATCCATCCTCAGG
TTCTTGAGACTGTCTTTGCAAGAATCCGCCAGCAATACGATAGACTCATCAGAGATGTCTCTGCATCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002872053 protein binding protein [Arabidopsis lyrata subsp. lyrata] | 689 | 2e-070 |
| NP_197725 leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily protein [Arabidopsis thaliana] | 688 | 2e-070 |
| XP_002513122 glucose regulated repressor protein, putative [Ricinus communis] | 586 | 2e-058 |
| ABI64127 putative F-box and leucine-rich repeat protein [Jatropha curcas] | 577 | 2e-057 |
| XP_002307150 predicted protein [Populus trichocarpa] | 539 | 5e-053 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9UKC9 F-box/LRR-repeat protein 2 | 144 | 1e-008 |
| Q5R3Z8 F-box/LRR-repeat protein 2 | 144 | 1e-008 |
| Q8BH16 F-box/LRR-repeat protein 2 | 143 | 2e-008 |
| A6H779 F-box/LRR-repeat protein 2 | 142 | 2e-008 |
| Q8NEE6 F-box/LRR-repeat protein 13 | 123 | 4e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FMW7 AT5g23340/MKD15_20 | 688 | 2e-070 |
| B9RGH0 Glucose regulated repressor protein, putative | 586 | 1e-058 |
| Q09HM7 Putative F-box and leucine-rich repeat protein | 577 | 1e-057 |
| B9H5N9 Predicted protein | 539 | 3e-053 |
| B9F1A0 Putative uncharacterized protein | 407 | 7e-038 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G23340.1 INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL4) (TAIR:AT4G15475.1); Has 9095 Blast hits to 3545 proteins in 210 species: Archae - 0; Bacteria - 454; Metazoa - 4575; Fungi - 774; Plants - 2118; Viruses - 15; Other Eukaryotes - 1159 (source: NCBI BLink). | 689 | 8e-073 |
| AT5G27920.1 F-box family protein | 115 | 3e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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