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Information for unigene UN44097
| FASTA Sequence |
| Unigene ID: UN44097 | Length: 958 |
SSR | | GACATATATAACTCATATCATAAAGCAAGTGTAGAAACAAGAAAATCAAAACAAACACACACAAAGTAAAACTTGATCATCTCTGT
ACAACAACAATTTAATAAGAAGATTGAAACAAATAAGAACAGATAACACCCTACATGGATATTTTTTTGGAACAAGTGAAAGAACA
TCATTTGTATGTACATAAAAGCAGAGGAGAACAAGAACAAGAACAAGAACAACAAGTTCAAGATGTTTTGTTCTTCTTTCCGATCA
GCGAGAACCAGATTGAGATCCAGAGGATGAAGAAGAAGAAGAGAACAATCCACTAAACGGCCACGAAAACGAGAACCTTCTTCCAT
TACCACTCCTCGCATCATCCTCCCTTCCTCTTCTTTCCTCATTCCCCACATTCTCAACAACGTTTCCGTTACTACTCTCCGGAAGA
GTCCTACTTCTTGTCCTCGCCGATTCAACCATACTCTCATCACCATTCGCAGAAGGAAGCTCGAACCGACACACGGGGCAAGAGCT
ATGAAGCTCGAGCCACGGAACAATACAACTTAACATGAAACTTATGCTTACACGGCATCTCTTTAGCTTCCTCCTCCACTCCTCCT
CCCCCAAACTCATCCAAACAAACCGAACACTGCAGCGACGGTTCCGTTATCTTAACCGTCGGCAAAGCATCTACCACTTCTTTACG
AGCAGGCGGAGTCCCTTGCCTGTTAGGATCGTTCTCAGCCAAATGCTGAAGCAAAAGATCCAATGAAGAGACAAGTAGATGATCGC
TGCTATCGGAGAACCGGAGATTCGAAATCCCATCGGACGGTGGATTCGAGAGCTCGCGACCTATAGATGGTACAAGAGTCATCGTG
AAGAACACAAATTTGAATTTTTAGGGTTTATCGTGGAAGAGAGAGAGAGTAGGTTTGAGAGAAAAGGAGCGTTTGAATTTCAAATT
TTATTCCTACCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_200445 RING/U-box domain-containing protein [Arabidopsis thaliana] | 359 | 5e-032 |
| XP_002864451 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 347 | 1e-030 |
| XP_002303979 predicted protein [Populus trichocarpa] | 262 | 1e-020 |
| XP_002285765 PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] | 261 | 1e-020 |
| CBI16568 unnamed protein product [Vitis vinifera] | 261 | 1e-020 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FM98 Genomic DNA, chromosome 5, P1 clone: MCD7 | 359 | 4e-032 |
| B9GXX2 Predicted protein (Fragment) | 262 | 7e-021 |
| O65594 Putative uncharacterized protein AT4g26400 | 254 | 6e-020 |
| Q8L5Z3 AT4G26400 protein | 254 | 6e-020 |
| B9SBM6 Zinc finger protein, putative | 253 | 7e-020 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G56340.1 zinc finger (C3HC4-type RING finger) family protein | 359 | 2e-034 |
| AT4G26400.2 zinc finger (C3HC4-type RING finger) family protein | 258 | 1e-022 |
| AT4G26400.1 zinc finger (C3HC4-type RING finger) family protein | 258 | 1e-022 |
| AT1G55530.1 zinc finger (C3HC4-type RING finger) family protein | 226 | 6e-019 |
| AT3G19950.1 zinc finger (C3HC4-type RING finger) family protein | 225 | 7e-019 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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