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Information for unigene UN44108

FASTA Sequence
Unigene ID: UN44108Length: 839 SSR 
GAATGAAAGCCATCTTATCAAAATCTTTCACAAACAGGACTGATGACTGTTCGTTATAAGAGACCTTTCAACATTCTACAAAAAGA
CAAATTTAGCACATAAAAATTTATGCACTTCACATACATTAATTAGAAAAGGTAAAATGCTAAACAAGAGCCCTGAGAATCTTTTT
GGCAGGAGAAAAATGACACTCAACAGACCTAAACTCTACTCATTGCTTTCAGGAGATTCAGCACCAGGGTTCGGATTGTTGAAGCC
ACCGCTCGGCGGAGCAGCAGCAGCAGCAGCAGCAGCTGGATTTGTTTGATAAGGAGGAGGCGGAGGAAGAGGAAGTCCATTATAAT
TGGGAGGCGGTCCACCACCTTGACCTGGTAATGGAGCCATTCCTGGTGGCCTAAGCATACCGTTTTGTGGTGGTGGAGGTAGAGGA
GCACCAGGTGGTGCCATCATCTGTGGTACTCCCGGAGGTGGCATGTAACCTTGACCAGGCATCATGGGTCTAGGGAGAACAGGAGG
TCGCATTCCCATAGGCATAGGCGTCATAGGGAGGCGAGGTCTAGCGAGCATATGCTGGTTAAACGCACCACCAACCTGATTGTACG
CTGCAGCTTGGCCAAGATGCTCTTTAATTCTCTGATCAATCAGACTTTGTGTTTGCTGTTCCTCAAATTGCTGATAGTATATCCTC
ACATTCGCCTTGTGTTTGTAACCGGCGTTATGCTGCTTCCTCACCGATGGGGAATCGTGGGTGAGATAAGTGTCGCAATAATCACA
GTAATACCTCGGCATCGCTCAGAGCTTCGGGAGGAGGAAGAAGAAGAAAGTGCAGAGAGAGACCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002874880 hypothetical protein ARALYDRAFT_911890 [Arabidopsis lyrata subsp. lyrata]8972e-094
NP_567250 C2H2 and C2HC zinc finger-containing protein [Arabidopsis thaliana]8863e-093
AAO44073 At4g03120 [Arabidopsis thaliana]8811e-092
XP_002304170 predicted protein [Populus trichocarpa]6248e-063
NP_001131283 hypothetical protein LOC100192596 [Zea mays]5315e-052

Swiss-Prot top hits (Blast detail)Scoree value
P09234 U1 small nuclear ribonucleoprotein C2785e-024
Q62241 U1 small nuclear ribonucleoprotein C2776e-024
Q32PA0 U1 small nuclear ribonucleoprotein C2741e-023
Q03369 U1 small nuclear ribonucleoprotein C2741e-023
Q54YA5 U1 small nuclear ribonucleoprotein C2481e-020

TrEMBL top hits (Blast detail)Scoree value
Q56XE4 Putative C-type U1 snRNP8862e-093
Q84VV2 At4g031208819e-093
B9GWP7 Predicted protein6246e-063
B4FBY0 Putative uncharacterized protein5313e-052
C5XYW4 Putative uncharacterized protein Sb04g0282605313e-052

Arabidopsis top hits (Blast detail)Scoree value
AT4G03120.1 proline-rich family protein8871e-095
AT1G61080.1 proline-rich family protein1593e-011
AT4G13340.1 leucine-rich repeat family protein / extensin family protein1477e-010
AT4G18670.1 protein binding / structural constituent of cell wall1423e-009
AT4G20440.1 smB (small nuclear ribonucleoprotein associated protein B)1396e-009

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
92  100%

Unigene MembersMember information