RadishBase

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Information for unigene UN44310

FASTA Sequence

Unigene ID: UN44310	Length: 827	SSR
GGGAAAGAAAAGAAGAGAAGCTCGAATGATCCTGGAGAAGAAATAAGAAGAAGATTCTGTCTTAGATCCTTTGATCTGATCAGAAC CGAAGAAGAAGAAGAAGAAGAAGAAGATGGGGATCCTGTTCACTCGGATGTTCTCTTCGGTGTTTGGCAACAAAGAAGCTCGTATC CTCGTCCTCGGTCTGGACAATGCTGGCAAAACCACTATCCTCTATCGGCTTCAGATGGGGGAAGTGGTCTCCACGATTCCTACTAT TGGATTCAACGTGGAGACAGTGCAGTACAACAATATCAAGTTTCAGGTCTGGGATTTTGGTGGACAAACGAGCATCAGGCCATACT GGCGATGCTATTTTCCGAATACACAAGCAGTGATTTATGTTGTTGACTCGAGCGATACTGATCGAATTGGTGTGGCTAAAGAGGAG TTCCATGCAATTTTGGAGGAAGAGGAATTGAAAGGTGCAGTTGTTCTCATATTTGCAAACAAGCAGGATCTTCCTGGTGCACTTGA TGATGCCGCTGTGACAGAAGCCTTGGAGTTGCATAAGATAAAGAGTCGTCAGCGGGCAATCTTCAAAACCTGTGCTGTTAAAGGCG AAGGTCTTTTTGAAGGATTGGACTGGTTGAGTAATACATTGAAGTCGGGAAGTGGCTAGAATCATCTTCATACACCGTCCCCCTGG ACGTTGTATCTTCTCTTCTTTACTTACTGGGTTGTTTAGTAATTTTTTTAGTTCTTCATTTAAAGAGTTAAATATCAAATGACATG TTTACTTATATTATTATTCTCTTCCTTTTGAGAAGATTAAAAAACCTTACACG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
Q96361 RecName: Full=ADP-ribosylation factor 1	922	2e-097
NP_850057 ADP-ribosylation factor 3 [Arabidopsis thaliana]	919	5e-097
XP_002869315 ADP-ribosylation factor 3 [Arabidopsis lyrata subsp. lyrata]	910	5e-096
XP_002324937 predicted protein [Populus trichocarpa]	888	2e-093
XP_002309696 predicted protein [Populus trichocarpa]	881	1e-092

Swiss-Prot top hits (Blast detail)	Score	e value
Q96361 ADP-ribosylation factor 1	922	1e-098
P40940 ADP-ribosylation factor 3	919	2e-098
P61211 ADP-ribosylation factor-like protein 1	614	5e-063
P61212 ADP-ribosylation factor-like protein 1	614	5e-063
P40616 ADP-ribosylation factor-like protein 1	612	9e-063

TrEMBL top hits (Blast detail)	Score	e value
A9PIU5 Putative uncharacterized protein	888	1e-093
B9ILB1 Predicted protein	888	1e-093
A9P9J4 Predicted protein	881	8e-093
B9IM33 Predicted protein	872	9e-092
C6TIQ6 Putative uncharacterized protein	872	9e-092

Arabidopsis top hits (Blast detail)	Score	e value
AT2G24765.1 ARF3 (ADP-RIBOSYLATION FACTOR 3); protein binding	920	2e-099
AT2G24765.2 ARF3 (ADP-RIBOSYLATION FACTOR 3); protein binding	651	2e-068
AT5G14670.1 ATARFA1B (ADP-ribosylation factor A1B); GTP binding / phospholipase activator/ protein binding	593	1e-061
AT1G10630.1 ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F); GTP binding / copper ion binding / phospholipase activator/ protein binding	591	2e-061
AT2G47170.1 ARF1A1C; GTP binding / phospholipase activator/ protein binding	589	4e-061

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	2			100%

Unigene Members	Member information