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Information for unigene UN44311
| FASTA Sequence |
| Unigene ID: UN44311 | Length: 1059 |
SSR | | GGGAGGAATTAGGGTTTTGAAGCAAAATCACGAATCAGAATCTCATCTTCGCCGCTCTCTCACTGACTGACAAAAAGTAGAAGATA
TGTCAGAAGAAGTGGAGTACCGGTGCTTCATTGGTGGGCTTGCGTGGGCCACGTCTGATCGTGGCCTCAGAGATGCCTTTGAGAAG
TATGGTCACCTCACTGAGGCTAAGGTGGTTCTTGACAAGTTTTCTAGGCGTTCACGTGGTTTTGGGTTCATCACTTTTGACGAGAA
GAAAGCTATGGATGAAGCCATTGCGGCAATGAATGGGGTGGATTTAGATGGGCGGACTATCACTGTTGATAAAGCTCAGCCACAGG
GTGGTGGATCCGGCAGGGATCATGATGGTGACCGCAGCCGTGATCGTGATCGTGATCGTGATCGTGATCGTGATCGTGATCGTGAC
CGTGACCGTAGTAGCCGTCCATCTGGTGGTGGGAGAGGTGGTTCAGGTGGTGGAGATTGCTTTAAATGTGGCAAGCCTGGACATTT
TGCGAGGGAGTGTCCTGATGAATCCGGTAGAGGTGGTGGTGGGGGAAGGTACAGCTCGAGAGATGATAGGTACAGCTCGAGGGATG
ATAGGTACAGCTCAAAGGATGATAGGTATGGTGGAAAAGAAGATAGGTATGGTAGGGATCGGTATGGACCTGATCGCAGTGGGGAA
CGTTCTGGAGGACGAAGCAGGGATGATGGCAGCCGTGGAGGTTCAGGAGGTGAGAGGCATGGCCGTGCTCCATACGATCGCCCCAG
AGACTAGAATTTTTCTCCAGAGGTCAAACAAGTGGAAGGTTTCTGCTTTCAGCTCTCATCAAGCGGGAAGTTAGATGGTCTGCTTT
GTTGAATGTATTTGGATAGCTCGAGAAAGAAGATGTGTATCTGTTTTGGCCCCTTAAACTCAAGAGTCGGCTAATGTCCTAATTAC
TCTTCTTTTGATATGTTGATCCTTTGGAAACCTTGTGCTTAGTTGGTTTGAGATTGAGAGACACAAATGTGCTACTTTAAGCTTAA
TCGTAATGAATGAGTTGGTTACCCCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAJ34585 unnamed protein product [Thellungiella halophila] | 823 | 1e-085 |
| XP_002875318 predicted protein [Arabidopsis lyrata subsp. lyrata] | 810 | 3e-084 |
| NP_189273 RNA recognition motif and CCHC-type zinc finger domain-containing protein [Arabidopsis thaliana] | 789 | 9e-082 |
| BAA12064 RNA-binding protein RZ-1 [Nicotiana sylvestris] | 686 | 8e-070 |
| ACX71299 RNA-binding protein RZ-1 [Capsicum annuum] | 673 | 2e-068 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P49310 Glycine-rich RNA-binding protein GRP1A | 336 | 1e-030 |
| Q03878 Glycine-rich RNA-binding protein | 326 | 2e-029 |
| Q03250 Glycine-rich RNA-binding protein 7 | 325 | 2e-029 |
| P49311 Glycine-rich RNA-binding protein GRP2A | 310 | 1e-027 |
| Q05966 Glycine-rich RNA-binding protein 10 | 306 | 4e-027 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LIN3 AT3g26420/F20C19_14 | 789 | 6e-082 |
| Q42412 RNA-binding protein RZ-1 | 686 | 5e-070 |
| D0V0M9 RNA-binding protein RZ-1 | 673 | 2e-068 |
| C4JAE0 Putative uncharacterized protein | 615 | 9e-062 |
| Q9AXN2 RNA-binding protein | 606 | 1e-060 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G26420.1 ATRZ-1A; RNA binding / nucleotide binding | 789 | 3e-084 |
| AT5G04280.1 glycine-rich RNA-binding protein | 362 | 1e-034 |
| AT2G21660.2 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding | 336 | 1e-031 |
| AT2G21660.1 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding | 325 | 2e-030 |
| AT4G39260.1 GR-RBP8; RNA binding / nucleic acid binding / nucleotide binding | 290 | 2e-026 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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