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Information for unigene UN44340
| FASTA Sequence |
| Unigene ID: UN44340 | Length: 1011 |
SSR | | GATTCAAACAGTAAAGAAGATATGACATTAGAGTGTAACAAAAGGAGCTTCTGTCTGAAACAACAATGCCTGTCCTCAATTGTTAA
CAAGAAACCACTCTAATTCTCTCCATACAAATCCAATGGATTTAATAATACTCTTCCTCACAGATTCCATGTTAAAAAAAAGCCTA
AGTCAATCTCTCTCACCTTTTCTTGGTCTTCTTAGCTGAATGACCCGTCTTCTTTTTGTGCCTGCTAAAATCTGAGACAAACCTGA
ATGTCTGCCCGCAACCCGGTTCAGCACAATGATAAGGCCTCTCCCCTGTGTGAACCCTTTATGTACTCCGTTCTTGACCAAGCCCA
CTTGAACGTCATCTTGCATCCCTTCCATGGACATTTCAGTGGACGGTCGTCCGAGTGGACACGCCGGTGTTGGACCAAATACTTGT
GCGAGAAAAAGCTTTTACCACAGCCTTTAACAGGGCAGATGTTTCTTTTATGCATTGACAACTGTTTCTCAGAACTGAAACTCATC
GTGCAACCCTCAATATCACATTTATACGCAGAAGCAGCAGCAGCAGCACGTTCCTCTTCCTCTTCTTCTTCAGCATCTTCCTCTAA
CTCTTCTTCTTCACTTACAACTCTAGAGAAGGAAGCATTACTACTTCCTCTCTTCGGTTTTGTCTCTGAAGACTTTCTTGAAGGCT
TCAGGTTTCTCACCCTAAGCCGTGTGCTAGGTCCCTCCATGTATGGATCTAAATCTTGATTCTTCTTTCTGTATCCAGACTGTTGC
AAAGTGCGGCGACCTCTTGTGTCTCTCAGAATCTCAACCATCTCGGTTTTTACTTTACGTTTAGCTGTGGACCTCGTTTGCCTTTT
CCTTGTACTGAAACCTTCTTGTTCCTCTAAAGAATCATCTTCTGAATCATAGTCACCACCTATTCGACTAGCTTGAATATTTCCCC
TCTGCTGATAAACTGGAATCCTAATCACTTTAGCTCGTTTGCTCCTAGGGTGCCTGTAGATATTA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002875902 hypothetical protein ARALYDRAFT_485204 [Arabidopsis lyrata subsp. lyrata] | 804 | 1e-083 |
| NP_680116 relative of early flowering 6 protein [Arabidopsis thaliana] | 758 | 3e-078 |
| XP_002875903 hypothetical protein ARALYDRAFT_906087 [Arabidopsis lyrata subsp. lyrata] | 624 | 1e-062 |
| CBI14884 unnamed protein product [Vitis vinifera] | 458 | 2e-043 |
| XP_002511265 nucleic acid binding protein, putative [Ricinus communis] | 439 | 3e-041 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q14872 Metal regulatory transcription factor 1 | 145 | 2e-008 |
| Q07243 Metal regulatory transcription factor 1 | 145 | 2e-008 |
| Q5EAC5 Zinc finger protein 410 | 142 | 4e-008 |
| Q13118 Krueppel-like factor 10 | 127 | 2e-006 |
| O89091 Krueppel-like factor 10 | 125 | 3e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9STM3 Putative zinc finger protein | 758 | 2e-078 |
| B9RAP0 Nucleic acid binding protein, putative | 439 | 2e-041 |
| B9I3K5 Predicted protein | 407 | 1e-037 |
| B8A7U6 Putative uncharacterized protein | 384 | 5e-035 |
| Q5N712 Os01g0907400 protein | 384 | 5e-035 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G48430.1 REF6 (RELATIVE OF EARLY FLOWERING 6); nucleic acid binding / transcription factor/ zinc ion binding | 758 | 1e-080 |
| AT5G04240.1 ELF6 (EARLY FLOWERING 6); transcription factor | 303 | 7e-028 |
| AT4G06634.1 zinc finger (C2H2 type) family protein | 132 | 5e-008 |
| AT4G06634.2 zinc finger (C2H2 type) family protein | 132 | 5e-008 |
| AT5G55040.1 DNA binding | 113 | 8e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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