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Information for unigene UN44372
| FASTA Sequence |
| Unigene ID: UN44372 | Length: 1531 |
SSR | | ATGAAAACGTTTGTCTTTATCTCAAAGATAAACTTGAAATCTTTGTGTCATAAACATCTCCTCCATTATAAAACCTAACGCATAAG
TCCAGAGAGATCCTTAAACACAACTTACTTACACTGAAACTGCTTTGAATCACCAATTAAACTTCATAAATTCATTAAAAAAAAGA
GTTTTGTTTTCGCAGGAAAGAAAACCATCTCAGAATCGAATGGGATCATCGCTTTTAGACGAGGACTGCTGCTTCTTCGGGTCATC
AGTTGAAGAAGAATCACCATCACCGCCGCTTTTCTTGCCAAATATCATCTCATCAAGATCATCCATCATGTCATCCCCACTCCCAC
CACCACTTCCGTGGACCCCAGCTCGTGCAATCGATGGTTTTCTGACCAGAGATTCTTCTTTTCCATGATCCGAAGAGTCATCAGGC
TCTTCGGCAACAGGAATCATGGCTGGTTCAGGTGCGGTTAGCGGTGCTGAGGGTTTGTTCATCTCCTCGTACTTGGACAGTGTTTT
CACGAGCTCGTCGTTCACATTCAATGCTTCAAACAGAAGGGCTTCGTCTTCACCCGCTGTTTCGATGATTCTTTGGACAGTGGTTT
GAGACTGACGACATTGCTGTACAAGTGTCATTGTTAAGTCATCCTGTAAAGCGTCGTGTTGAGGGGAAGAGGACAGAACCGTGGAA
AGAAGTTCAATGCTGTTTCTTGCTATATCGAAAGCTTCCTTCGTCTGCTCAGCGGTAAAGCTTCTTACAGGAGCATGTTCAGGCTC
ACGCGCATGCTGAGGAGGATCAGCATTCAATTCTGGTGCTGGAGCTGACCGAGCAGGTGTGAAGATAGGTGCCAAGCTCTCGTTGT
CTCGTCCAGGGAAACGGATACCTCTCGCTTTTAAGCTCTTGTAAGTTTCTTCGAAAACTGGAAGGTAACGGAGTTCACTGGTCGAT
TCTCCCCAAGCTTCAATCAGCATCAAAGCCTTGTTCCGATTATTCACAACCGTCTGCGGATCATCAACAAGCTTAACCATTTCATC
AAGGACTCTCTCAGCTGCCACCTCCGAGAAGGCCTTCTCACAGTTCTTAACACACGTCTCAAGCAAAACCAAGGCAAGGTACTGAA
TCCTCGGCTGCTTCATCATCATTATCCTCTTCTTTATCCCACGGATCAGATCAACGCCGTTAATAGCCTCCTGATTAATCATGTCG
CATATCTCCAAATTCATATCCCAGTCAGGCTCCTCTAGATTCTCCGAAGTGGCATCTTCGACTATTTTATCAGTTGGGTTCGGACC
TTGGAAAAGCTCCTTGACTTTGAAGCTCATCGAGGTCATGCCAGCGGTGATCTTGTTGCTCACTTCAGATCCTCCGATCTTGAGGC
GCTCGCCGAATGCGGTGACTTTGTCCATGAGATTGTCACTCATCTTTGCTGATTCTTCAAAACCTACGACAAGTCAATATCGTTGA
CGCCGGCCAAATTCTCCAAGGAAGACGAAGAAGAAGAACGCGTCTCTCTCTCTCTCTTAAAGTGTTTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_197190 Target of Myb protein 1 [Arabidopsis thaliana] | 1819 | 5e-201 |
| XP_002871740 VHS domain-containing protein [Arabidopsis lyrata subsp. lyrata] | 1811 | 5e-200 |
| XP_002882268 VHS domain-containing protein [Arabidopsis lyrata subsp. lyrata] | 1600 | 1e-175 |
| XP_002520034 protein transporter, putative [Ricinus communis] | 1508 | 6e-165 |
| XP_002325818 predicted protein [Populus trichocarpa] | 1458 | 4e-159 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q5SRX1 TOM1-like protein 2 | 287 | 1e-024 |
| Q6ZVM7 TOM1-like protein 2 | 277 | 1e-023 |
| Q68FJ8 TOM1-like protein 2 | 267 | 2e-022 |
| O88746 Target of Myb protein 1 | 253 | 9e-021 |
| O60784 Target of Myb protein 1 | 249 | 3e-020 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LFL3 AT5g16880/F2K13_30 | 1819 | 4e-201 |
| B9S215 Protein transporter, putative | 1508 | 4e-165 |
| B9IPJ6 Predicted protein | 1458 | 3e-159 |
| B9N112 Predicted protein | 1401 | 1e-152 |
| C6TGU6 Putative uncharacterized protein | 1398 | 2e-152 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G16880.1 VHS domain-containing protein / GAT domain-containing protein | 1820 | 2e-203 |
| AT5G16880.2 VHS domain-containing protein / GAT domain-containing protein | 1820 | 2e-203 |
| AT5G16880.3 VHS domain-containing protein / GAT domain-containing protein | 1337 | 2e-147 |
| AT1G06210.1 VHS domain-containing protein / GAT domain-containing protein | 582 | 5e-060 |
| AT1G06210.2 VHS domain-containing protein / GAT domain-containing protein | 424 | 1e-041 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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