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Information for unigene UN44400

FASTA Sequence
Unigene ID: UN44400Length: 765 SSR 
GTATTTTGTTCTTTTCTAATTACTAAATCAACACATAGCGAAAGAACATCATCCACTGTACGTGCTCTCTGATTCAGAACTCAGAA
AGTCAGAAACTTGAGATTCTCTGAAACATAAAAGCGAATTAATCATGACGCTGGTTGCACCCCGTTCCACGCACGCGGGTCATCAG
CGAGTTCGTTGATACGGTTGTTGCGGCTTTCTTGTACGTATGCCACACCAGCCCAAAGCCCCCGTATAAGTAGAATGCTCGTAAAC
ACAATAGTCCCAAGTGTGCAAGCTACCTCGAGAAAGGCCTTCGAGATCCACAAAAACGCAAGTATAAGTACGCCATTCACTGAGAA
ACCCACCAGCTTGGTGGAGATGGAAACAGGCAAGATTGATCGGACGGCTTTCCTAGCTCTCTTGGAGACTTTTCTGAACACATTCT
CGACGAACCTAAGCAAAAGATCCAAGCTTCTATCTTCTTCTTCTTCTTCCTCGTCACGCTCGTCTTCCTCTTCATCGAACTCGTAC
TCCGGTCTGATCTTCCGGTTCCAGCTCAAGTCATCCCTCCCGTTGATGAAATCGCGGGGTCGCCGGGAAGCAAAGAGAGAAGAAGG
AAGATGATCATCAGGGATTCTGGTTGTGGCTTTGGGAGCGAGGAAGAAGAAGAAGGAGAGTGGAGATCGAGTTTTGGTTGAGAGAA
GCGCTAGAGATGAAGGCGATGAGATTGATGCGGACGACTGCATCGTTCGTTACGCATCAGACCCACTCTGCTTCCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002867158 hypothetical protein ARALYDRAFT_491300 [Arabidopsis lyrata subsp. lyrata]7762e-080
NP_567935 uncharacterized protein [Arabidopsis thaliana]7278e-075
XP_002298793 predicted protein [Populus trichocarpa]5037e-049
XP_002522105 conserved hypothetical protein [Ricinus communis]4956e-048
XP_002276036 PREDICTED: hypothetical protein [Vitis vinifera]4893e-047

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q8LCF7 Putative uncharacterized protein7275e-075
B9GIN1 Predicted protein (Fragment)5035e-049
B9S7Y9 Putative uncharacterized protein4954e-048
O81894 Putative uncharacterized protein AT4g337803871e-035
C5WRR6 Putative uncharacterized protein Sb01g0420603825e-035

Arabidopsis top hits (Blast detail)Scoree value
AT4G33780.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: SHW1 (SHORT HYPOCOTYL IN WHITE LIGHT1) (TAIR:AT1G69935.1); Has 20 Blast hits to 20 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).7282e-077
AT1G69935.1 SHW1 (SHORT HYPOCOTYL IN WHITE LIGHT1)2775e-025

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
72  100%

Unigene MembersMember information