RadishBase

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Information for unigene UN44413

FASTA Sequence

Unigene ID: UN44413	Length: 653		SNP
GGGATAACCATTCAATCACAAATCTCCGCCGGTTATCAAAAGATGTTTGAGATTATTCAGGCGGCTATCACCGCTGGGGCTGCATT AGCTCTCTTGGTACTCGCCGGTATAACCCTTGGCGGCTCAGCCGTGGGATTAGCCATAACCACGCCGCTTTTTGTCTTTTTCAGCC CGATTCTCGTGCCAGCAACTATAGCCACCGCTTTGCTAGCTACGGGTTTCACGGCCTCCGGCTCCATCGGTGCCATGGCTGTCACC ATCTTCATGTGGCTCTTCAAGAAAATAACCCGCCAAAAATTCCAGGATTAACCCCGAAAAATCCAACTACGGAAGGGGGGAAAAAG GAGGATGAAAAAAAGGAAAAAGAAAAAAGGATAAGTAGGCCTTTCGTACTACAGAGGAACTTCATGATACTTTTAAATAAAAGTAT AAAACCAAAGTTTAACCATCGTCTCTTCAATTAAATACCTGATTATATGCGGATGTTTCAGATAGTGTTCACTTGATGTATATCGT GTTAGGAAATTACAATAAATATACTCGATTGTGGTGTATACTTTAAGAGAATGAAGTGATATCATTGAGATTACCATATAAAGATG ATTGTTTTCAAGTTGTATTATTGAGTTATTCGAATAAAGCAATTAAGACGC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
AAR15434 pollen coat oleosin-glycine rich protein [Sisymbrium irio]	333	3e-029
AAR15433 pollen coat oleosin-glycine rich protein [Sisymbrium irio]	317	2e-027
AAQ56112 pollen specific glycine-rich protein GRP19 [Boechera stricta]	300	2e-025
AAR15481 pollen coat oleosin-glycine rich protein [Olimarabidopsis pumila]	300	2e-025
AAR15462 pollen coat oleosin-glycine rich protein [Capsella rubella]	292	1e-024

Swiss-Prot top hits (Blast detail)	Score	e value
P29111 Major oleosin NAP-II (Fragment)	212	1e-016
Q43284 Oleosin 14.9 kDa	212	1e-016
P29525 Oleosin 18.5 kDa	210	2e-016
P29109 Oleosin Bn-V (Fragment)	208	4e-016
P29110 Oleosin Bn-III	204	1e-015

TrEMBL top hits (Blast detail)	Score	e value
Q6V5I4 Pollen coat oleosin-glycine rich protein	333	2e-029
Q6V5I5 Oleosin	317	1e-027
Q6V5D6 Oleosin	300	1e-025
Q6WEP8 Oleosin	300	1e-025
Q6V5F5 Oleosin	292	1e-024

Arabidopsis top hits (Blast detail)	Score	e value
AT5G07550.1 GRP19 (GLYCINE-RICH PROTEIN 19); lipid binding	291	9e-027
AT5G07550.2 GRP19 (GLYCINE-RICH PROTEIN 19); lipid binding	285	5e-026
AT5G07510.1 GRP14; lipid binding / nutrient reservoir	237	2e-020
AT5G07510.2 GRP14; lipid binding / nutrient reservoir	229	1e-019
AT5G07530.1 GRP17 (GLYCINE RICH PROTEIN 17); lipid binding	227	2e-019

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	4			50%


6	4			50%

Unigene Members	Member information