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Information for unigene UN44495
| FASTA Sequence |
| Unigene ID: UN44495 | Length: 693 |
SSR | | GATCCACGGTCCGGAGCAATCAAGAGCTGTTAAAATGATTGAGAGAGAAGTTGGAAGCAAATTCACTGAGCTTCCTAGCTTTCCTG
TGGAACGTGGAAGCGGAAGCATGTTTGAAGGAATAGGCGGTCGATCAGGTGGATCCTATGGAGGAGGCATGAGGGATCGCAGTTCA
AGCTATGGCGGTCGTTCAGGTGGTTACGGTGGTGGTGGTGGTGGTGGTAGTGGTAGATATGGTGGTGATCGTTCAGAAAACCGTTA
TTCCGGCGGTTCTTCCAGTTACGGCGGGGGCTTTGGTTCAGGAGGTTCAAACAACCGTTCATCAGGAGGTTTTGGTGGATTTGGTT
CAGACCGTTCTTCACAGTCAAGTGGAAGGAGCAGCTTCGGTGGGTTTGGATTAAAGGATCCTAACAGATCTTACTGAGACCGTACT
GCGTCATTGATCCGACCTGGCAATAATGGAGGGCTTGGTGTCTCGAGTAGAGTTTAGTTGCAATGAGTCAAGAGAGCTATATATAA
ATCTGTAGCTCCTCCCTGTCTCATACACAAAACATATTTTATTTTGAAGTTTTTGTCATGATTCATATTCTCTAATTTTTATTTTC
TACTTGGGTAGTAGAATTATTGTTTCTTTCTATTTGTATTTGTATTTGGCCACTTCCATAAACATAAACAGAGAGCAGAGTATGAA
CCCAA
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| GenBank top hits (Blast detail) | Score | e value |
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| NP_188870 DEAD-box ATP-dependent RNA helicase 9 [Arabidopsis thaliana] | 418 | 4e-039 |
| CAA09200 RNA helicase [Arabidopsis thaliana] | 418 | 4e-039 |
| NP_188872 DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana] | 408 | 6e-038 |
| XP_002862173 hypothetical protein ARALYDRAFT_333427 [Arabidopsis lyrata subsp. lyrata] | 407 | 8e-038 |
| XP_002883355 hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp. lyrata] | 404 | 2e-037 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LUW6 DEAD-box ATP-dependent RNA helicase 9 | 418 | 2e-040 |
| Q9LUW5 DEAD-box ATP-dependent RNA helicase 53 | 408 | 3e-039 |
| P13645 Keratin, type I cytoskeletal 10 | 206 | 8e-016 |
| O18740 Keratin, type I cytoskeletal 9 | 203 | 2e-015 |
| P35527 Keratin, type I cytoskeletal 9 | 196 | 1e-014 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C8VGJ1 Putative uncharacterized protein | 204 | 2e-014 |
| Q5B200 Putative uncharacterized protein | 204 | 2e-014 |
| Q31DH1 RNA-binding region RNP-1 | 202 | 3e-014 |
| B9PV72 Putative uncharacterized protein | 185 | 3e-012 |
| Q5TU53 AGAP002965-PA (Fragment) | 185 | 3e-012 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT3G22310.1 PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1); ATP-dependent helicase/ DNA binding / RNA binding | 419 | 1e-041 |
| AT3G22330.1 PMH2 (putative mitochondrial RNA helicase 2); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding | 408 | 3e-040 |
| AT4G36230.1 unknown protein | 180 | 7e-014 |
| AT5G46730.1 glycine-rich protein | 175 | 3e-013 |
| AT2G36120.1 DOT1 (DEFECTIVELY ORGANIZED TRIBUTARIES 1) | 173 | 5e-013 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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