 |
Information for unigene UN44539
| FASTA Sequence |
| Unigene ID: UN44539 | Length: 980 |
SSR | | TTTTTTGGTCTCTCTCTCTCTCTCTCGTTCAGACGACGATTACTGATATTCCGTTGATCGCCAGATTCTCTACGTTGGAAAGATCG
ATCTAGATACGCCATGAATCCTGAATATGACTATCTGTTCAAGCTTTTGCTTATCGGTGGTTCTGGTGTTGGAAAATCCTGCTTGC
TTCTAAGATTTGCTGATGATTCTTACCTGGACAGCTACATCAGTACCATTGGTGTTGACTTTAAAATCCGCACAGTTGAACAGGAC
GGAAAGACAATCAAACTCCAGATCTGGGACACAGCAGGCCAAGAGCGTTTCAGGACAATCACAAGCAGCTACTACAGAGGAGCTCA
TGGCATCATTGTCACCTATGATGTCACTGACCAAGAGAGCTTCAACAACGTCAAGCAATGGCTGAACGAAATCGACCGTTACGCCA
GTGAGAATGTGAACAAGCTACTGGTTGGGAACAAAAACGATCTCACTTCACAGAAAGTTGTCTCCACTGAGACTGCTCAGGCTTTT
GCAGATGAACTTGGGATCCCTTTCTTGGAAACAAGTGCTAAAAATGCAACCAATGTTGAAGAAGCCTTCATGGCCATGACTGCTGC
TATCAAGACCAGAATGGCTAGCCAACCATCTGGAGGTGCCAAGCCACCGACTGTCCAGATTCGTGGACAGCCAGTGAACCAGCAAT
CAGGCTGCTGCTCATCTTGATTCCCATTAGTCGTCTCAACAAGTCTCTTTGGATCATTACAACAACCATTATAATCATTTGTTTGC
ATTGCATGTAAGACTTCTACAATTGACAACTCGTTGAATCCTTTTCTTTTGTTTTTCATAGCTTTGCTTTGCTATTCTTTTATCTA
ATGTATTTTCCAAATTTGAAAACCCATAAATTCTTTAGTGAAAGGCCTTCCATGCAAATAAATCAAATGTCACCTTTTCTATCTAC
TTTCTCCACTCTTTAGTAAAATTATTCGACTTAT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABD64935 GTP-binding protein, putative [Brassica oleracea] | 1019 | 2e-108 |
| NP_568678 RAB GTPase-1A [Arabidopsis thaliana] | 1017 | 3e-108 |
| NP_193486 RAB GTPase homolog 1C [Arabidopsis thaliana] | 1005 | 7e-107 |
| ABD65068 GTP-binding protein, putative [Brassica oleracea] | 1004 | 9e-107 |
| AAL31108 AT4g17530/dl4800c [Arabidopsis thaliana] | 996 | 8e-106 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q05737 GTP-binding protein YPTM2 | 927 | 3e-099 |
| P28188 Ras-related protein RABD2A | 899 | 6e-096 |
| P40392 Ras-related protein RIC1 | 878 | 2e-093 |
| Q39571 GTP-binding protein YPTC1 | 827 | 1e-087 |
| P31584 GTP-binding protein yptV1 | 817 | 2e-086 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q2A9V7 GTP-binding protein, putative | 1019 | 1e-108 |
| Q9FPJ4 AT5g47200 | 1017 | 2e-108 |
| Q9SEH3 AT4g17530/dl4800c | 1005 | 5e-107 |
| Q2A9H3 GTP-binding protein, putative | 1004 | 6e-107 |
| Q8W4S8 AT4g17530/dl4800c | 996 | 5e-106 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G47200.1 ATRAB1A; GTP binding | 1018 | 8e-111 |
| AT4G17530.1 ATRAB1C; GTP binding | 1006 | 2e-109 |
| AT1G02130.1 ARA-5 (ARABIDOPSIS RAS 5); GTP binding | 900 | 4e-097 |
| AT3G11730.1 ATFP8; GTP binding / GTP-dependent protein binding / myosin XI tail binding | 782 | 2e-083 |
| AT5G59840.1 Ras-related GTP-binding family protein | 607 | 4e-063 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
