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Information for unigene UN44602

FASTA Sequence
Unigene ID: UN44602Length: 959 SSR 
TTTGAGTTAGATTTGTGTTGTTGAGCTAGATCTTTGTTCGCTGCGTAAATCTACGAAAGTTATGGTTTTTGGATTCATGGGGGTTA
TTAGTTTCAGAGATGAACAGAAGAGGAAGATCTCCTTGCGTCATTCATGGAGGTACAAAGAGCATAAGATGACAAAGGAGAGAGAG
AGAGAGTAAAGGAATGCTTTTCTGTTATTTAGTAAAGTGTGATCAACACACGATATATACATGTTTACAGCTTACCCGGAACAAAC
CGGTTATTGAGTTAAATCAAATATACAATTGAACCGTATACAATGTACCGAATCTAACCGACTATAACCAATTCCCCCTCAAGATG
GAGCGTATATGTTAATGAACTCCATCTTGCTCATAAGATGTCGGAAAGATGAAGGATACTGAGGTTTGGTAAGTATATCTGCAAGC
TGATTTCCAGTTCTGACATGGAGAGTACGGACCAGACCTTTCTTAACCCATTCTTTGACAATGTGACAATCACGTTCGACGTGTTT
GGTTCTTTCTTGAAAGACCGCGTTGTTAGCTATGTGTATAGCAGCAGTGTTGTCACAATACAGAGGTGCAGCTTCTCGAGTTTCTA
TCCAAAGATCTTCCATCATATTTCGAAACCAAATCATCTCCTTAACTGCTTCAGACATCGCACGATACTCTGATTCAGCGGAAGAG
CTAGAGACAGTATCTTGTTTATTTGACCTCCAATTGATAAGAGAAGAACCAATGAAGACGCATAAACCAGATACGCTCTGACGAGT
ATAAGGACACGAGCCCCAATCGGCATCGGCGAAAGCAGAGAGTTTGAGGTCTGACTGAGAAGAGTAGAAAAGACCCAAACCTATTG
TGCCCTTGAAGTAATGTAGTACTTTGTAAGCAGCTTGGAGATGTGGAGCTCGAGGAGAGGAAGTGAACTGACAGAGTTTGTGAACT
GCAAAGGTATTGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAB10503 retroelement pol polyprotein-like [Arabidopsis thaliana]6633e-067
AAC62795 contains similarity to retroviral aspartyl proteases (Pfam: rvp.hmm, score: 11.80) [Arabidopsis thaliana]6454e-065
AAG10817 Putative retroelement polyprotein [Arabidopsis thaliana]6445e-065
CAA72990 unnamed protein product [Brassica oleracea var. acephala]6212e-062
AAB61111 Strong similarity to Zea mays retrotransposon Hopscotch polyprotein (gb|U12626) [Arabidopsis thaliana]6079e-061

Swiss-Prot top hits (Blast detail)Scoree value
P04146 Copia protein2893e-025
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942624e-022
P93290 Uncharacterized mitochondrial protein AtMg002402501e-020
P92519 Uncharacterized mitochondrial protein AtMg008102401e-019
P0C2J7 Transposon Ty4-H Gag-Pol polyprotein1764e-012

TrEMBL top hits (Blast detail)Scoree value
Q9FJV3 Retroelement pol polyprotein-like6632e-067
O82607 T2L5.9 protein6453e-065
Q9FX79 Putative retroelement polyprotein6443e-065
O23742 SLG-Sc and SLA-Sc genes and Melmoth retrotransposon sequence6212e-062
O04543 F20P5.25 protein6076e-061

Arabidopsis top hits (Blast detail)Scoree value
AT4G23160.1 protein kinase family protein4901e-049
ATMG00240.1 hypothetical protein2509e-022
ATMG00810.1 hypothetical protein2401e-020

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  100%

Unigene MembersMember information