 |
Information for unigene UN44642
| FASTA Sequence |
| Unigene ID: UN44642 | Length: 825 |
SSR | | CTTTAAACGAATCATATCTTTATATATCTTGGAAAAAAAATCAGTAACACCAAAAATCTTGACTTTACAAATCGAATAACAAATTA
CAAATATAAACCAAAACGTATATGAAATCCCACAAAAATAATACCAAATAAAATATCTTTCACTCATCCCTGCTGCATCAACAACG
TTTTAAAACTTGTTTTCTTCTTCCCTTCTTCTAAGGTGTCTTGTTTTGGCACCCACCAAACCCTAATGCTCTTGTCAAGACCTCCG
CTGTAAAGCATGAATCCAGCACCCACATTGTTGGGTGAAGCTTGCAAGCATTTCACCGGACCTTCATGCCCATGTATGACTCCAAA
TTTACAGAGCTTACCACTCTCTTCTCTCTTCCACAGTCCGATGCTCTCAAGACAGAGAGAGGGAGACAGACACTGAGTGAGCTTGG
GAGAGCTTGAGACCTCAAGAACTGAAGACTCGAGAGAGTGAGCTAAGCAGTGTGAGCTTGAGACAAGAGAGCCAAAACACAGAAGA
GAGAGAGGGAGAGCTCGAGCTGCGGCAAAGAAGAGAGAGAGCTCTGAAGACGAGAGAGTGACAGAGAGAGCTGAGTTCGAGAGAGA
CAGAGAGAGCTTCAAGAGATCGAGAGATCGAGAGAACGAGAGAGACAGAGAAAGCTGAGTTCGAGAGAGAGAGAGAGAGCTGGGTT
CGAGAGAGAGAGAAAGAGAGAGAGAGCTGGGTTCGAGAGAGAGAAAGAGAGAGAGATCGAGAGAGATGTGTCTGAGATCGAGAGAG
ATGGAGAAGATAAGGCAACTGCGTCAATGGAAAAGAGAGTTGCGTCTACGG
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002876111 hypothetical protein ARALYDRAFT_485550 [Arabidopsis lyrata subsp. lyrata] | 362 | 2e-032 |
| NP_190761 transducin/WD40 domain-containing protein [Arabidopsis thaliana] | 359 | 4e-032 |
| XP_002304776 predicted protein [Populus trichocarpa] | 291 | 3e-024 |
| XP_002297770 predicted protein [Populus trichocarpa] | 283 | 3e-023 |
| XP_002513112 F-box and wd40 domain protein, putative [Ricinus communis] | 271 | 7e-022 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q5T200 Zinc finger CCCH domain-containing protein 13 | 167 | 3e-011 |
| Q86AH4 Putative uncharacterized protein DDB_G0271982 | 160 | 2e-010 |
| B2RY56 RNA-binding protein 25 | 152 | 2e-009 |
| P49756 RNA-binding protein 25 | 151 | 3e-009 |
| P93008 DEAD-box ATP-dependent RNA helicase 21 | 142 | 3e-008 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SV11 At3g51930 | 359 | 3e-032 |
| B9GWK1 Predicted protein | 291 | 2e-024 |
| B9GM47 Predicted protein | 283 | 2e-023 |
| B9RGG0 F-box and wd40 domain protein, putative | 271 | 5e-022 |
| A5B0V1 Putative uncharacterized protein | 248 | 2e-019 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G51930.1 transducin family protein / WD-40 repeat family protein | 360 | 1e-034 |
| AT5G67320.1 HOS15 (high expression of osmotically responsive genes 15) | 149 | 4e-010 |
| AT2G18540.1 cupin family protein | 145 | 1e-009 |
| AT2G33730.1 DEAD box RNA helicase, putative | 142 | 3e-009 |
| AT1G20920.1 DEAD box RNA helicase, putative | 139 | 6e-009 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
