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Information for unigene UN44754

FASTA Sequence
Unigene ID: UN44754Length: 685 SSR 
CAAAATCATGTGTTGTTTTGTCTTCATCCGCCTAATCAGTAATCCCAAAGAACAAGTACAAAAGTCTACAAGAGCGGAGAGAGAGA
GAGAGAGAGAGAGAGATAATTTACAAAAAAGGAACTGGAAAAAAAGCAACTGAAGTGAACTGCATGGCTGTTTCAGAGGACCTGCT
TGAGCCAGTGGCAGTCCACAGCATCTTTCTCTAACTCGTCTTTCAACTCGCATAGGCGTTTAAGTGAATCTTTAAGCTCCATTTTA
TCAACTGGTATCTCTGCAAATTCTTTCAGAAACTTGTGAGCTCGTGATGTCCCTCTTGATACTTCCTCTGCATCATCTTCTCTGCT
CTTTCTCTTCCCACTCTCCTCTCTGGGGGAGAAATCTTCCAGTTCTGCAGCTTTCTCCCTTGCGAGCGCCACTACGCTTTCAGGGA
AGTTGGCAAACTCAGCCACATGGATCCCAAAGCTCTGGTCACATGCCCCTGGTTCAACCTTGTAAAGCATGGTGAGTTTGCGGCTT
TCTGTGTCGATGTGTGCGCTGACGTGGAAGTTTGCAACACCAACGGTGTTACCTGCAACCTCAGAGTTCGCTTGAGCCAAGGCAGT
AAGTTCATGAAAGTGAGTAGCAAACAGAGTAGGAGCTTTCTTCACTTGAACCAGATGCTCACATATAGCCCATGCTAAACCAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_566804 DNA mismatch repair protein Msh2 [Arabidopsis thaliana]8101e-084
AAD04176 mismatch repair protein [Arabidopsis thaliana]8073e-084
XP_002885262 hypothetical protein ARALYDRAFT_479358 [Arabidopsis lyrata subsp. lyrata]8002e-083
AAT67044 DNA mismatch repair protein [Petunia x hybrida]6031e-060
ADG85112 mismatch repair protein [Solanum lycopersicum]5985e-060

Swiss-Prot top hits (Blast detail)Scoree value
O24617 DNA mismatch repair protein Msh28107e-086
Q9XGC9 DNA mismatch repair protein MSH24253e-041
P25847 DNA mismatch repair protein MSH22712e-023
O74773 DNA mismatch repair protein msh22327e-019
O13396 DNA mismatch repair protein msh-22013e-015

TrEMBL top hits (Blast detail)Scoree value
Q6DQL7 DNA mismatch repair protein6031e-060
D6QY20 Mismatch repair protein5984e-060
Q00ZW2 Mismatch repair ATPase MSH4 (MutS family) (ISS)4561e-043
B9RE38 DNA mismatch repair protein MSH2, putative4434e-042
B9I2Q3 Predicted protein4221e-039

Arabidopsis top hits (Blast detail)Scoree value
AT3G18524.1 MSH2 (MUTS HOMOLOG 2); ATP binding / damaged DNA binding / mismatched DNA binding / protein binding8115e-087
AT4G02070.1 MSH6 (MUTS HOMOLOG 6); damaged DNA binding1314e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
72  100%

Unigene MembersMember information