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Information for unigene UN44772
| FASTA Sequence |
| Unigene ID: UN44772 | Length: 1125 |
SSR | | AAGACAAAACTATTTTGCATTTCTATGAGACTTAAGAGATATTACATTACACTATATGTGATGGAAGAAACATTTTTGAATAAGAC
TACAGCCAACCTCCTGTTCTTTATCGCATATATTATCTTCTTCTTTTAGCCTCAATAGAATACAAAAAAAGATATTGTGGTTTTGC
TGCTTCATGTACTGATGTTTGAAATCATCTCACTGCTCTCAAGACTGCTTCCCTCTTCTGTAACAGAAGGACGAGACACGGTGGCT
CTCTCTGAAGTCAAATTTAGCCTCAGTTCTCTGCCTTCAACTTCCACGCCATTCATGGCCCTCAGGGCAGACTGAAGGTCTTGTGC
AGATTCAAAAGAGACGAAACCAAACCCCCCGAGACCTCCCGCTGTCTCTTTCATACACGACTTTAGCACCAAGCACACCAGGTTGG
TCAGCAAATGCATCTTTCAGACCTTGCGAGGTTAGATCCCAACCAAGGTTTCCTGCATAGAGCTTGTGAGGACTGTCAACATAGCT
CCGGTTACCATCACGGATCTTGGCTGCTCTCATTACTTCTCTCTCTCCGCCTCTTGGCACCTCCGGGAAGTTCACTTTCACCGTTC
TACCACCAATTTGAGAGGTGTTGAACATCTGAATAGCTTCTTTGGCTTCTTCAATGCTTCCCATCGTTACGAATCCAAACCCTCTG
CTTCTGTCAGTGACTTTATCATACACAATCTGAACATCTACGACATTTCCAGCTTGTCGGAAAAGTTGAGAGAGCTCGGAAGAAGT
GATTGTGTATGGTAAGTTTCCAACGTACAGCCTCCCTTCCTCACCACTGGCTTGCGTCGTCTGTTTCACATCTTCTTCTTCTTCTT
CGTCTTCTGATGCGACGGGGAGTTCGTCTTCGGTATCGGCGGCGCAGGAGAAACGGTGGCGACGGGTATTGGAATGGAGGGAGATG
GGATTGAGGAAACTGGCGACGAGTTTGAAGGATTTTGGTGGAAAGCGATTGAAGAGTCTGAGGGAGGGGAATAAGGGTTTAAAGGT
AGAGGTGGAGGAAGCGGGAGATACAGCGACGGCGGAGGGACAATAGGCTAACGACGACATTTTCTTTGGGGGGGAGTGAGGGAAGG
GAAGGCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002876141 RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata] | 767 | 3e-079 |
| NP_190806 chloroplast RNA-binding protein 33 [Arabidopsis thaliana] | 757 | 5e-078 |
| AAL32533 ubiquitin / ribosomal protein CEP52 [Arabidopsis thaliana] | 755 | 8e-078 |
| BAA06523 RNA-binding protein cp33 [Arabidopsis thaliana] | 749 | 4e-077 |
| XP_002264127 PREDICTED: hypothetical protein [Vitis vinifera] | 632 | 2e-063 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P19684 33 kDa ribonucleoprotein, chloroplastic | 621 | 1e-063 |
| Q08935 29 kDa ribonucleoprotein A, chloroplastic | 348 | 6e-032 |
| P49313 30 kDa ribonucleoprotein, chloroplastic | 336 | 1e-030 |
| Q04836 31 kDa ribonucleoprotein, chloroplastic | 317 | 2e-028 |
| P82277 30S ribosomal protein 2, chloroplastic | 298 | 4e-026 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q39061 AT3g52380/F22O6_240 | 757 | 3e-078 |
| Q8W4N7 Ubiquitin / ribosomal protein CEP52 | 755 | 6e-078 |
| Q39062 RNA-binding protein cp33 (Fragment) | 749 | 3e-077 |
| Q08940 Ribonucleoprotein (Fragment) | 623 | 1e-062 |
| Q08948 33 kd chloroplast ribonucleoprotein | 623 | 1e-062 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G52380.1 CP33; RNA binding | 757 | 2e-080 |
| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 317 | 2e-029 |
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 239 | 2e-020 |
| AT5G50250.1 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | 228 | 4e-019 |
| AT3G53460.1 CP29; RNA binding / poly(U) binding | 211 | 4e-017 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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