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Information for unigene UN44870
| FASTA Sequence |
| Unigene ID: UN44870 | Length: 1071 |
SSR | | CCAACCGAGTCATCTTTTCGGAATTTATAATCAACTGGTTTCAACTTTCAAGAGACGATGCTAAACAAATACTTACGAATGAAACT
TTAATGTAATGAAAAGTTCTTTTTAGGCCAGTAGCACTATGTAACGAAGACGCTCTAGGGGTCCAGGAATGACGCCCGCGTGGGCC
GGCATTGATGCCACGTGCTGAAAGTTCATGCGGTTTGGCAAAAATACAAACCATTTTTTTGAGTTTCCTTGCTTGGCCCACAAGCC
ACATCCGGTTTAGATGCTCCATAACCTTTTCAATGATAAAACCGGGTTAATAGAGCCTTCAAATTCTGCGGGAATCTCCACCGTGA
GACCAACCAAATCGATCGGTTCTCTCTCACACGCCTCCAGAGGAAACCTCAACGGCGAAGAAGAAGAAGAAGAAGAGGAGGAGGAA
GAAGAACTTCCGGTTTCTATGTCTTCGACCGGTTTAACCGGAGCGGCTTGTTCGGGTAGTGTGGACATATATTCGGGTTGAACCGG
AGCTCTGCAAAGAGGGCAAGTGGAACTGGAGCGGAACCAGGTATCAATGCAATCGACGTGAAAAGCGTGGCCACATTTCGGGAGGA
GACGGCCTTTGTCGTCTTCCTCGAACTCCGACAAGCAAACGGAACACTCCTCCAGTGGCGATTGATGAGTCTCCGAGGAGTAAACG
AAGATCGGAATCTTCTCGAGGACCGCTGGATCGAGAGGGGTGAGAGAGGAGGAGGAGATGGTTGAGGCGGAGAGAGAAAGGATGTG
AGCACAAATCCGGCGGCGAATGCGACGGTTCTGACGACGGAATAGCCATCTGGCGTAGCTGTGGAAGCAGATTATCATAACCAGGG
CGACGGAGAGGATGATGACGGAGGAAATCATGATTTTGCCACTGAGAGCGTGGCCTGGAGAAGCGTGGCTGATGCTCCCCCACATT
GGCTTGCTGCTTTCTTCTGCTATTCCCATGGTTTCTATTTATATATAGAGAGAGAGAGAGAAAGACAACGGATATAAAAGGAAAAG
ATTTAGGCAGAGAGAGTATAGCTGCTTATTATGTGTCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_191828 RING-H2 finger protein ATL5 [Arabidopsis thaliana] | 844 | 4e-088 |
| AAD33583 RING-H2 zinc finger protein ATL5 [Arabidopsis thaliana] | 839 | 1e-087 |
| XP_002878471 hypothetical protein ARALYDRAFT_907844 [Arabidopsis lyrata subsp. lyrata] | 833 | 7e-087 |
| XP_002882123 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 620 | 3e-062 |
| NP_182278 RING-H2 finger protein ATL64 [Arabidopsis thaliana] | 617 | 8e-062 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LZJ6 RING-H2 finger protein ATL3L | 844 | 2e-089 |
| O22255 RING-H2 finger protein ATL2N | 617 | 3e-063 |
| Q8L9T5 RING-H2 finger protein ATL3F | 366 | 4e-034 |
| Q9SLC3 RING-H2 finger protein ATL2L | 257 | 2e-021 |
| Q8LF65 RING-H2 finger protein ATL4G | 252 | 7e-021 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q0WRF5 RING-H2 zinc finger protein ATL5 | 844 | 3e-088 |
| B9RT88 Ring finger protein, putative | 421 | 3e-039 |
| B9HXR4 Predicted protein (Fragment) | 403 | 3e-037 |
| B9N029 Predicted protein | 394 | 4e-036 |
| B9SAU1 RING-H2 finger protein ATL3L, putative | 388 | 2e-035 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G62690.1 ATL5 (ATL5); protein binding / zinc ion binding | 845 | 1e-090 |
| AT2G47560.1 zinc finger (C3HC4-type RING finger) family protein | 622 | 8e-065 |
| AT3G16720.1 ATL2; protein binding / zinc ion binding | 366 | 4e-035 |
| AT2G42360.1 zinc finger (C3HC4-type RING finger) family protein | 257 | 2e-022 |
| AT4G15975.1 protein binding / zinc ion binding | 257 | 2e-022 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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