Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN44965

FASTA Sequence
Unigene ID: UN44965Length: 889 SSR 
CATCTAAGGACATGAACATTAACCTCCCAAAGAGAGTAGATCAAAAGGAAGAAGGATTAAGTTGAACGAATCAAGAGTTTCGGGGA
AAAAAAAAGCAAAGAAACTAAAACCTATAAGTGCAAAACCATACAAACCTACTGAGGAACATCTTCTTCTTCATGGTCTCCGTCTC
TATGCGTTTGAGAAGCTGTTGGTTTTTCAGACACTCTCACATTATATTTCTCATACACTTTTTCTCGATTCTCCGACCACCATGTC
TCTGCTTGATGTTCACCGAATCTTCTCCGGCTGAAGCGGACTCTTCTTAGCTCTCTAGTTCCATCATGAAGTGCCACAAGGGTTAT
ATACACACCAGGCTCATACTGTTCGATCCACTCTGCTTCTACATCATTCGTATTGTCAAAAGCTCCTGTGTGGCTCGAACCATTGT
CGTTTTGGAACTGGAACGGCTCGTGTCTCTCACTGATTACTGACCCGCTGCTGCTAAGCCGCGGATCTACTGGATAACCGTTGTTG
TTGTTGTTGTTTCTTTCGCCGGCTCTAGGAGTGTGCTTTGGCGATTGGAGACTAGACCATGATGCATTGGCAAAGGCGAAGTCAGA
AGGAGCAAGTGAAGATACAGAGGAAGTCATGGACTCTGATCTTGAATGAAGGAAACCATTTTCTTCGGGGAAATTGAAACCGTTTT
GTAGGCAGGTGAGTTTGATGCTCTCACCAGGAGGTAGCTTCTCAGCTACATCCTTGAGCTGCGCTATGAGTGACTTTATTGCTTCC
TTAGCAGCTCTTGATTTGGCAGACTCTTCCTCTGCCAATGCCAAGGCTTCCTGAGTCTTCTTAACCGAGTTCTGAAGCTCTACTTC
TTGGAGTTCACACTTCTGAGTCAAACTGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
AAL58903 At1g76950/F22K20_5 [Arabidopsis thaliana]10844e-116
AAC00618 Unknown protein, contains regulator of chromosome condensation motifs [Arabidopsis thaliana]10844e-116
NP_565144 regulator of chromosome condensation and FYVE zinc finger domain-containing protein [Arabidopsis thaliana]10844e-116
XP_002887663 zinc finger protein [Arabidopsis lyrata subsp. lyrata]10746e-115
BAD94309 zinc finger protein [Arabidopsis thaliana]8148e-085

Swiss-Prot top hits (Blast detail)Scoree value
Q5HZ09 Protein Brevis radix-like 32283e-018
Q17TI5 Protein BREVIS RADIX2257e-018
Q8GYL9 Protein Brevis radix-like 22185e-017
Q8GZ92 Protein Brevis radix-like 42176e-017
O82281 Protein Brevis radix-like 12168e-017

TrEMBL top hits (Blast detail)Scoree value
O49281 F22K20.5 protein10843e-116
Q8W111 At1g76950/F22K20_510843e-116
Q947D2 Zinc finger protein10843e-116
Q56WW7 Zinc finger protein (Fragment)8146e-085
Q9FHX1 TMV resistance protein-like5082e-049

Arabidopsis top hits (Blast detail)Scoree value
AT1G76950.1 PRAF1; Ran GTPase binding / chromatin binding / zinc ion binding10851e-118
AT5G42140.1 zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein5081e-051
AT5G12350.1 Ran GTPase binding / chromatin binding / zinc ion binding2392e-020
AT5G19420.1 Ran GTPase binding / chromatin binding / zinc ion binding2355e-020
AT1G54180.1 BRX-LIKE3 (BREVIS RADIX-LIKE 3)2274e-019

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
122  100%

Unigene MembersMember information