Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN44994

FASTA Sequence
Unigene ID: UN44994Length: 1192 SSR 
GAAGTACAAAGGGAGATAATGTGATGATGATGATGATGAATGACCACCATCCCACATAATATTATTACGAATGTAACAGGTTGAAG
AAAAAAGAAGGCAGTAATTAATCTAACATACAACAGAGAAATCACCTTTCACTCATGATCTATATCAAACCAGAAGTAGAGGTAAG
CCTTCGAGTACATGACTCGAATCCGCTGCAGTACCAAGTCTCCGCTAGTAGCAACAGCCTTTGCACCTCCTTCTATCCTTGTCTGC
AAAACAGTCACACTGTTTCCCTTAATCTTTTCAACAACGGTTTCCTTCACTTCCACATGTCTGCTCAAGTTATCTTCTTCTTCTCC
AGCAGTGCTCACGATTGGGCATGAGAGATGGTCCAAAGGGTTCGTTTCACATTGAAGCTCGCATCCATCAATCGTTATCCTTCCAC
TCCTGTGAAGCAAGCAGCAGCCAAGCTCGGCTTTTACTGTTAGATTCGCTAGCTTGCAGGTTGATAGCAACTCCAGGGCACTGCAA
AAGAAACCCAACAAACACAAAGCCGTATACCAAAGAACTTTTGATGCAATGAATAAAGAAACACTAGCATGGCGACATAGAACATG
ATGGTATAAATGCGTTACGCAGCAACTTTCTAGGACGCTAAACATCCAATAAAGCATTTAAAAGAAGAAGAAAAACTGCAGAGTGA
AAAAATGACTTGAAAGGGAATATGAGCTCCAAACCTGTCTGATCCTCTAGAACATACAAGGGTGGTTTCATCAGGAATCTCGCCAC
CACCAATCAGGCAAATAGGCTTTTTAATCTGAATATTAGAAACGCGATGACTTCCACCAGCACCTATTAAAATGGTATCACCAGGT
CTTGCAGCAGATACAGCAGACTCAATGTCATGGAAAACTCCAGGGAGTGATAAACCCTTCACAAAAGGGTCGACTCGTAGCCACAA
GCGAGGGTGACAGGCCAGATATCTCCATCAGGAATTGGAGAGAGGAAGCTGAGGATGTGCATGAGGCAACCATCATCGAGATTGTT
AAGAGATGTGAGAAACTCATGTTTCATTCTCTTCTTCTTCTTCATCCTCGGTTCGGTGATTCGCTTGTCGTCAAGCTTTGAGATTT
TAGGAGTCTCCATGGAAGGAAGCAATCAATGAACCCTAAACTCCTCGCCGTCGTTTAAGATCAAGCCGACTCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002877981 skp1-interacting partner 5 [Arabidopsis lyrata subsp. lyrata]5703e-056
NP_566999 F-box protein SKIP5 [Arabidopsis thaliana]5684e-056
AAG21980 SKP1 interacting partner 5 [Arabidopsis thaliana]5684e-056
CAB77568 putative protein [Arabidopsis thaliana]4351e-040
AAG40405 T14E10.50 [Arabidopsis thaliana]4206e-039

Swiss-Prot top hits (Blast detail)Scoree value
Q94FT2 F-box protein SKIP55682e-057

TrEMBL top hits (Blast detail)Scoree value
Q0D3Y2 Os07g0659700 protein (Fragment)3694e-033
C6TMS4 Putative uncharacterized protein3613e-032
Q940D2 SKIP5-like protein3561e-031
D5A8A6 Putative uncharacterized protein3506e-031
B9GM21 F-box family protein3462e-030

Arabidopsis top hits (Blast detail)Scoree value
AT3G54480.1 SKIP5 (SKP1/ASK-INTERACTING PROTEIN 5)5691e-058
AT3G54480.2 SKIP5 (SKP1/ASK-INTERACTING PROTEIN 5)1756e-013

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
122  100%

Unigene MembersMember information