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Information for unigene UN45172
| FASTA Sequence |
| Unigene ID: UN45172 | Length: 1049 |
SSR | SNP | GATTGATAGCACACAACACAACACAACACAACACAACACCTTCTTCTCTTTTCCCCCATTATTATCTCCTTCCTTCCTTGTCCGAC
AATGGCTACTTTCCTAACAGCTGTTGTTTCAATCAAACCCACACTCTTCTCATTCCACTCCGAGTCCTCCACCTCTTTGCAATCTC
AGACCAATGCATTCGCTCTCAAAGCCAATGCATTCGCTCTCAAAGCCAAAGCCTTTCCTTCTGTCCCCAGACCCATCTCTCTTCCA
CGGACCTCCAGAACGAGATTCATCCCTCGCGCAACGATGGAGACGGAAGAAAAACCCGCTTTGGACCCTAACGCAGAATCCTCAAG
ACGCGTCTACATCGGAAACATACCAAGAACCGTAACTAACGAACAGCTCACCAAACTCGTCGAAGAACACGGCGCCGTTGAACAAG
TCCAGGTGATGTATGATAAGTACTCAGGAAGAAGCCGTAGGTTTGGTTTCGCTACTATGAAATCAGTTGAAGATGCCAATGCTGTG
ATTGAGAAGTTGAACGGCACTACAATTGAAGGACGTGAGGTGAAGGTTAATATTACAGAGAAGCCTCTAGAATTATCATCATCATC
GTCTCCTGATTTGTCGCTGCTTCAGTCTGAAGATGCAGCTTTTGTGGATAGTCCTTACAAAGTGTATGTAGGGAATCTGGCAAAGA
GTGTTACTAAAGAGATGCTTGAGAGTTTGTTTTCTGAGAAAGGCAAAGTTCTGAGTGCTAAGGTTTCGAGAGTGCCTGGTACTTCG
AAATCTACTGGGTTTGGGTTTGTTACGTTTTCTTCTGATGAAGATGTCGAAGCTGCTATCGTGGCTCTTAACAATTCTTTGCTGGA
AGGACAGAAGATTCGGGTGAATAAGGCCTAGTGTGTGTGTGTGTGTGACAGTGAGAGAGAGGGCGAGTCTTTTGTCAGAATCTTTT
TTTTTTGTATTGTATTTGAGGAGTTTGTAATGCAAAACATTTAGAGCATAGTGTCATTATCTTTGTAATCATTCTAAGGTGATGAA
AGCATTAAGTTTATTTC
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| GenBank top hits (Blast detail) | Score | e value |
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| NP_566958 RNA recognition motif-containing protein [Arabidopsis thaliana] | 929 | 5e-098 |
| BAH19693 AT3G52150 [Arabidopsis thaliana] | 924 | 2e-097 |
| XP_002876128 hypothetical protein ARALYDRAFT_348313 [Arabidopsis lyrata subsp. lyrata] | 875 | 9e-092 |
| CAB41335 putative protein [Arabidopsis thaliana] | 871 | 3e-091 |
| XP_002513193 ribonucleoprotein, chloroplast, putative [Ricinus communis] | 726 | 2e-074 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P82277 30S ribosomal protein 2, chloroplastic | 674 | 8e-070 |
| Q08935 29 kDa ribonucleoprotein A, chloroplastic | 351 | 2e-032 |
| P49313 30 kDa ribonucleoprotein, chloroplastic | 350 | 3e-032 |
| P19684 33 kDa ribonucleoprotein, chloroplastic | 339 | 6e-031 |
| Q04836 31 kDa ribonucleoprotein, chloroplastic | 207 | 1e-015 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8VYM4 Putative uncharacterized protein At3g52150 | 929 | 3e-098 |
| B9DG26 AT3G52150 protein | 924 | 1e-097 |
| Q9SUZ0 Putative uncharacterized protein F4F15.260 | 871 | 2e-091 |
| B9RHH4 Ribonucleoprotein, chloroplast, putative | 726 | 1e-074 |
| B9HNK5 Predicted protein | 718 | 1e-073 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G52150.1 RNA recognition motif (RRM)-containing protein | 930 | 1e-100 |
| AT3G52150.2 RNA recognition motif (RRM)-containing protein | 930 | 1e-100 |
| AT3G52380.1 CP33; RNA binding | 368 | 2e-035 |
| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 207 | 1e-016 |
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 194 | 3e-015 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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