RadishBase

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Information for unigene UN45196

FASTA Sequence

Unigene ID: UN45196	Length: 871	SSR
CGGATAAGTTTTCATGTAACTTGATCTTGGTCAATAATTTTGACTTATCGCAAGAACATGTATTAGTTGTCTTCATCGGTTCTTCT TCTATCTAACATAGAGAGAGAGAGCTATGACAGATTACACTCAGAAGAAGGGATGAAGATTACTCAAGAGACTCTGGTAACATTGT GGTGTATCCATTTGCAGAGATTAGAAAAAAAAAGCAAGAGTAGTTTCTGAATCACCAGATTACATCAGTGTTGACTGTTGACACAT CTTGAGGTCTCTTTAACCACAACACCAACCTCCATGAGAGATAGCACCATCTCTTCCTCCAGCTGCACCTTGAGGACGCCCATAGC AAACCTTGCTGCCTCGTTGGATAACATCAAAGACGCCGTCCTGAATGTTCTGGAGGATCTTTGCTGCTGTCTTTACGAAGGCCTGT TCATGTTAAATGCGATATTTAAGCATGTCATTCCAGCTTATTGCAAGGAAGTATCATAACCTCCTCAACGTTTTGAGCTGTTCTTG CAGATGCTTCTAAGAACAAAGATCCGTGTTCTTTGGCAAACTGTTCTACTTCCTCTTTGCTAACAGCTCTCTTGTGAGCAAGATCG CATTTGTTCCCCATCAGCATAATGCTCATGTTAGGAATAGCATGTTGCCGAGCATTCTCTAACCAGCTCGCCAGATGGTTAAACGT TTCTCTCCTGGTGATGTCGTAAACAAGTAAAGCTCCGGCTGCTCCTCTGTAGTACGATCTGGTGATGGATCTAAAAAATAATCTTG TCCAGCCGTGTCCTAAATTTGTAGTTTGACGGGGCGTCCCTCCACGGTGACCATCCGATCACCGAACTCGACACCAATTGTGAGAT CGTGGACTGAT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002867050 GTP-binding 2 [Arabidopsis lyrata subsp. lyrata]	442	1e-041
NP_195311 GTP-binding protein GB2 [Arabidopsis thaliana]	438	3e-041
NP_001078499 GTP-binding protein GB2 [Arabidopsis thaliana]	438	3e-041
XP_002312839 predicted protein [Populus trichocarpa]	432	2e-040
XP_002526048 protein with unknown function [Ricinus communis]	431	2e-040

Swiss-Prot top hits (Blast detail)	Score	e value
Q39570 GTP-binding protein YPTC4	410	3e-039
P36863 GTP-binding protein yptV4	410	3e-039
P49103 Ras-related protein Rab-2-A	408	4e-039
P49104 Ras-related protein Rab-2-B	408	4e-039
P61105 Ras-related protein Rab-2A	352	1e-032

TrEMBL top hits (Blast detail)	Score	e value
A8MRA2 Uncharacterized protein At4g35860.2	438	2e-041
Q38922 ATGB2	438	2e-041
A9P8X5 Predicted protein	432	1e-040
B9SJ79 Putative uncharacterized protein	431	1e-040
A5AMI3 Putative uncharacterized protein	427	4e-040

Arabidopsis top hits (Blast detail)	Score	e value
AT4G35860.1 ATGB2 (GTP-BINDING 2); GTP binding	438	1e-043
AT4G35860.2 ATGB2 (GTP-BINDING 2); GTP binding	438	1e-043
AT4G17170.1 RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C); GTP binding / GTPase	413	1e-040
AT4G17160.1 ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A); GTP binding	374	3e-036
AT3G12160.1 RABA4D (RAB GTPASE HOMOLOG A4D); GTP binding	266	1e-023

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	2			100%

Unigene Members	Member information