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Information for unigene UN45238

FASTA Sequence
Unigene ID: UN45238Length: 1305 SSR 
ATGCCACAAAGTTCTACATTGATATTAACAAATTTATACAAAGTCCACCCAAACCACATTACAGAAAACAGAGTAAGCAAGAGAGC
AAAGATATTACAACCAACAGAAAACCCTTATTAAGAAGGTTATGCTGATGAATCACTGTCCTTCAATAAGTCATCCATTTGCTTCA
TCTGATCATCACAGTCCCTTACTTTGTGTTCTGCTGCGTCAACATCTTTCTTCTTAGCATTATTATCATTCTCAATGACATGAACA
TCATACACAATCGCTTCTTGATCATCATCATCATCATCATCAATGTGCTTGTAAGTCTCAAGTTACTTCTCAAGAAAATGCTTTTC
CCTCTCCCTTTTGAATAAAATCTCCTTGAGAATATTCATCTCTTCCTCATCATATGCAAATTTCTCCTCAATCATTCTCTCATACT
GCTTTCCTTCCATTTCAAGTGAAGCTTTATCAGCTTGTAACCTCAGAATCATAGCCATGGCTTCATCAGCTGCTGACGCTGAAGCC
GCTCTTTCTTCCTCCAATTCCACGATTAGAGCAGATCGAGCCAACCTCTCTTCCTCAACGGCTTCTTCAAGCAATCTCACCTTATT
CATTAATTCCAAGTTCTTATCTTTACCAACCCAACTCTTTCTCTCTTCTTGGTCTTGATGATGCCAAACGCTTGTTCTACTTGTAA
CGGCCATCTTCTGGATTCTGAGTATGATCTCGAATGGCAAGTCAAAGAGAAGTTTATGGATGTTTTGGTGGTACCCAAGCATTCCA
GAAGAGGGACAAGGCAAATAGAGTAAGAACTTGGATGCAATAAAGACCAAAGCTGATACACATAATAGACAATAAGCAAATGCTAA
TTCAAGAAAAGCAACCAAGATTCCAGTAAACGTTATCCGATAACTTTCAGGGTAGTCCATTTTTGTGTGTTCACTCTCTCAATCAA
TAGCCAGATCTTTCCGGAATCTGAAATCTCAGCGTCTGAATATGAAACCAAACCTGATGATCTGTAAAGAAAAACTTAAACCATAC
AAAAAAAAAACAGAGAAAGATTAGCTTTTAATACACTCCAAACTAAGGAAACATCATGAGTTCAGCCAAAAGAACTCAATATATGA
AATCATTACATCATAGATTAGAAAAAAACCCTAAATTTTGTCAAAGATTTCGGAAAGGAAGAAAGAAAAGTTATTAGACAAAAGCT
CAATCAAAACCTATACCAGTCAAGAAAATAATTGATCTCGTTGTAATAAAAGAAAAGAAAAGAGATGAAGCTGAGGTCAGAGCGAA
CCACCTCAAACTCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002863266 hypothetical protein ARALYDRAFT_497080 [Arabidopsis lyrata subsp. lyrata]9933e-105
NP_193052 uncharacterized protein [Arabidopsis thaliana]8921e-093
XP_002266466 PREDICTED: hypothetical protein [Vitis vinifera]3599e-032
CBI17315 unnamed protein product [Vitis vinifera]3599e-032
XP_002518099 hypothetical protein RCOM_1019660 [Ricinus communis]3534e-031

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9SVR1 At4g131608929e-094
B9RWI0 Putative uncharacterized protein3533e-031
B9IJH5 Predicted protein3524e-031
B9S519 Putative uncharacterized protein3471e-030
B9RWI2 Putative uncharacterized protein3354e-029

Arabidopsis top hits (Blast detail)Scoree value
AT4G13160.1 unknown protein8925e-096
AT4G13630.1 unknown protein3244e-030
AT1G04890.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Intermediate filament protein, conserved site (InterPro:IPR018039), Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13630.1); Has 6609 Blast hits to 4661 proteins in 382 species: Archae - 48; Bacteria - 283; Metazoa - 4004; Fungi - 343; Plants - 346; Viruses - 6; Other Eukaryotes - 1579 (source: NCBI BLink).3226e-030
AT5G16720.1 unknown protein2402e-020
AT1G70750.1 unknown protein2213e-018

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
92  100%

Unigene MembersMember information