RadishBase

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Information for unigene UN45377

FASTA Sequence

Unigene ID: UN45377	Length: 1241	SSR
GGATAGTCTCGCCTCCCCCAAAAACCCTCCTGCCCTTCCTTACTTTCAAACCTTTCGTCTCCAGAAATACTCAGAAGATGAGCAAC GACAAGGACAACTTCAGCCTCGCCGATCTCGCTGCTGCTCTTAAAGACGAGGATCGAGCCGGCATCATGAACATTCTCAAGAACAA GATGGCTGGGGACGTGCTCGAGAATCTGTCTCCTCAAGTGAGAGCGCGTGTCGATGCCTTGAAGGATATACAGAGCCAACACGATG AACTTGAGGCTAAGTTCCGCGAGGAGAGAGCTGTTCTTGAAGCCAAGTATGAACAGTTGTATCAGCCTTTGTATGCCAAGCGTTTT GAAATTGTTAATGGAACTACCGAAATCGAGCTTACTCCAGAGGATGCTAAGATGTACCAAGGCCAAGGAGAGGACAAAACTGCTCA AGAGAAAGGAGTTCCCAGTTTCTGGCTGACTGCTTTGCAAAACAATGATGTTACTTCCGAGGAGGTCACAGAGCGTGATGAAGAGG CTCTCAAGTATCTTAAAGATATCAAGTGGTGCAAGACCGAAGAGCCTAAAGGATTCAAGCTCGAGATTCTTAAAAAGAAGCCTAAT AGAGGTTCTACGAACGCCAAACCAATCACTAAAATGGAAGCTTGTGAAAGCTTCTTCAACTTCTTTAATCCTCCAGAAGTCCCGGA TGAAGATGAAGATATCGACGAGGACAGAGCTGAGGAACTTCAGAATCTGATGGAACAAGATTATTACATTGGTTCTACTATCCGAG ACAAGATTATCCCGCATGCCGTCTCATGGTTTACTGGTGAGGCTGTGGAAGGACAGGAGTTTGATGATGATGAAGATGATGATGAT GAAGATGAAGATGATGATAGTGACGAGGATGATGAAGAGGACGAGGATGATGATGATGATGAGATGGAGGATGATAACAAGACTAA AAAGAAGAAGGGAGGCAGATCTCAGATTGTTGGTGATGGTCAGCAGGGCGAGAGACCACCAGACTGCAAGCAACAGTGATCTCGAT GCTCTACTGAACAAAAAGGCATGTGTGAAAATATATCTCGAGTCATTCCCAGTTCATCTAGAATTGAAAATTGAGAAAAAAAAAAG TTTTAGTTGTTTTTTTTATAGTGTGAAAGTCTTCTCCTTATTGATGATGTTCTCATTCGAGTTCTGCTCATTTGTATTGTTGGTGT TTATTTTCGTTGAATTATTTAAGACTTAATACCTTGG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002281573 PREDICTED: hypothetical protein [Vitis vinifera]	614	2e-061
CBI27898 unnamed protein product [Vitis vinifera]	614	2e-061
AAA50234 nucleosome assembly protein I-like protein; similar to mouse nap I, PIR Accession Number JS0707 [Arabidopsis thaliana]	600	9e-060
NP_194341 nucleosome assembly protein 1-like 1 [Arabidopsis thaliana]	600	9e-060
ACU24430 unknown [Glycine max]	598	2e-059

Swiss-Prot top hits (Blast detail)	Score	e value
P25293 Nucleosome assembly protein	272	4e-023
O59797 Putative nucleosome assembly protein C364.06	243	1e-019
P09405 Nucleolin	168	5e-011
Q08438 Protein VHS3	165	1e-010
Q4PIC4 Transcription elongation factor SPT5	156	1e-009

TrEMBL top hits (Blast detail)	Score	e value
Q38809 Arabidopsis thaliana Col-0 nucleosome assembly protein I-like protein (Fragment)	600	6e-060
Q9SZI2 Nucleosome assembly protein I-like protein	600	6e-060
C6TND8 Putative uncharacterized protein	598	1e-059
C6TJB3 Putative uncharacterized protein	594	3e-059
B7FJ69 Putative uncharacterized protein	589	1e-058

Arabidopsis top hits (Blast detail)	Score	e value
AT4G26110.1 NAP1;1 (NUCLEOSOME ASSEMBLY PROTEIN1;1); DNA binding	682	1e-071
AT4G26110.2 NAP1;1 (NUCLEOSOME ASSEMBLY PROTEIN1;1); DNA binding	682	1e-071
AT5G56950.1 NAP1;3 (NUCLEOSOME ASSEMBLY PROTEIN 1;3); DNA binding	642	5e-067
AT2G19480.1 NAP1;2 (NUCLEOSOME ASSEMBLY PROTEIN 1;2); DNA binding	582	4e-060
AT2G19480.2 NAP1;2 (NUCLEOSOME ASSEMBLY PROTEIN 1;2); DNA binding / binding	582	4e-060

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	2			100%

Unigene Members	Member information