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Information for unigene UN45416

FASTA Sequence
Unigene ID: UN45416Length: 1127 SSR 
GGAGGCCCAGTAGACACGTAACGTATTTCATTTCCTTTTCTCTAAATAAGCCCAATTGTAAAGGACCAACCGACGCAACTGAATTT
GTTTAAAGAAACTTTTTTACTTTTCCCCTTTCTTTCCCAATTCCAAGCCCTAAAAATTTCGACCTCGCTTCACCACAGTAGCCGAG
TGAGAGAGAGAGAGAGATGGCGCTGCAAGATGAGCAAGAGCACGAGGTGTACGGCGGAGACATCCCAGAGGAGGACGAAGGCGAGA
TGGAGACGGACGAGTATCTAGAACACGCCGGAGAAGAAGAAGAAGGCGCCGCCGCCGCCGCGGAAGACGAGGAGGAGCTAGAGCCA
GGCTCTGCTTCTAGGGATTTAGAGGAGATGAAGAAACGAATTAAGGAGATCGAGGAAGAGGCTAGTGCTTTGCGTGAAATGCAAGC
CAAAGCTGAGAACGATATGGCTGCTGCTCAAGATCCATCAAGTGCTATTAGTGCGGCTGAGAAGGAAGAAGTGGATTTGCGTTCTA
TATATGTTGGCAATGTGGACTACGCATGTACGCCAGAGGAAGTCCAGCAGCATTTTCAATCCTGTGGGACGGTCAATAGGGTTACG
ATTCTGACGGATAAGTTTGGCCAACCCAAAGGTTTTGCGTACGTGGAATTCGTTGAAGAAGAAGCCGTTCAGAATTCTCTTGTTTT
GAACGAGACAGAACTGCATGGTCGTCAGATAAAGGTATCTGCAAAGAGGACTAACGTCCCCGGGATGAGGCAATTCCGAGGAAGGC
GACCCTTCAGACCCATGAGGGGCTTCATGCCCGGACCTCCATTTTATCCTCCATATGCTTATGGGAGAGTTCCCAGGTTCAGACGG
CCAATGCGCTACAGACCATACTGATTGAAGCAAATTTGGTGGTTCAAAAAAGTAGCAGCTGCCTTTTGTTTGAGGAAGGCTATTTT
TACCAACCTGGTTCATCAGGAGCAAAGTTGCTTCGCTTAAACAGAGATGGGTTTAAGAATTTTATGGAAGAGTGGGGCAAAGGAGG
GAACTGTGTTTAGATTTCTGTAACAATATTTGATTTTCTTTTTCATTTGTCATAAAACTCAAAGCTTTCTATTGAGAATGACCTTC
ACGTTACTG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
AAM61036 contains similarity to poly(A)-binding protein II [Arabidopsis thaliana]10291e-109
NP_568751 polyadenylate-binding protein 1 [Arabidopsis thaliana]10254e-109
XP_002864097 hypothetical protein ARALYDRAFT_918145 [Arabidopsis lyrata subsp. lyrata]10148e-108
BAA97374 unnamed protein product [Arabidopsis thaliana]9654e-102
AEN74948 poly(A)-binding protein 1 [Citrus sinensis]8472e-088

Swiss-Prot top hits (Blast detail)Scoree value
O14327 Polyadenylate-binding protein 23826e-036
Q7KNF2 Polyadenylate-binding protein 23763e-035
Q9DDY9 Polyadenylate-binding protein 2-A3754e-035
Q7ZXB8 Polyadenylate-binding protein 2-B3745e-035
Q28ZX3 Polyadenylate-binding protein 23737e-035

TrEMBL top hits (Blast detail)Scoree value
Q8LG48 Contains similarity to poly(A)-binding protein II10291e-109
Q93VI4 AT5g51120/MWD22_610253e-109
Q9LU62 Similarity to poly(A)-binding protein II9653e-102
B7FL26 Putative uncharacterized protein7556e-078
B9ICE3 Predicted protein7441e-076

Arabidopsis top hits (Blast detail)Scoree value
AT5G51120.1 PABN1 (POLYADENYLATE-BINDING PROTEIN 1); RNA binding / poly(A) binding / protein binding10376e-113
AT5G65260.1 polyadenylate-binding protein family protein / PABP family protein6693e-070
AT5G10350.1 polyadenylate-binding protein family protein / PABP family protein6471e-067
AT5G10350.2 polyadenylate-binding protein family protein / PABP family protein5842e-060
AT2G16940.1 RNA recognition motif (RRM)-containing protein1353e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  100%

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