RadishBase

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Information for unigene UN45514

FASTA Sequence

Unigene ID: UN45514	Length: 1049	SSR
GGACTTGTAACATTTCTACAACTGTAGCCAAACAGACCATTCTCTTATGGTGGTGATGATCATCATCATGTGATATTATCTCTCAT TACCTTCTTCTTCTTCTTAGTACTGTGATAAAATGGGAAGATCACCGTGCTGTGACAAATTGGGTTTAAAGAAAGGGCCATGGACA CAAGAAGAAGATCAGAAACTTTTGGCTTATATTGAAGAACATGGACATGGAAGTTGGCGTTCATTGCCTGAGAAAGCTGGTCTTCA CCGATGCGGCAAAAGCTGCAGACTAAGATGGACTAACTACCTAAGACCTGACATCAAAAGAGGCAAATTCAACTTACAAGAAGAAC AACCCAAAAACGAAACTCCTCTGTCTTCTCTCGGTTTAACCAAGAACGCAGCCATACTTAGCCACATGGCTCAATGGGAAAGTGCT AGACTTGAAGCTGAAGCAAGGTTAGCTAGAGAATCAAAGCTTCTTCATTACCAAACCAAACCATCATCACATCATCATCATGGTTT CACCCATAAGACATTGTTAACCACTTGGACAAGTAAAACAAGCCAAGACCAGCAACAGCAGCAGCTTGAGTTTCCGACATCTACAG TGTCGTTTTCGGAGATGAAGGAACCGTTGGCGGCGAAGACTGAGTTCGTTGGATCATCCACGTGTCTAAACTCGATCAAAGAACCT GAAAACGATTGGTTCAACTCAACGGTCCACGAGTTTGAAACCACGGAGATGGCGGGAGGAGTGGACGAAGGGTTCACCGGTGTAAT GCTCGCCGGAGATTCACTAGGCCAGAGCTTATCCGACGAGAAACACGAAACGGTGAAAGAGAGAAGTGGTGGTGACTGCAGCAACT ACTACGAGGAGGACAACAAGAACTATTTGGACAGCATTTTCAGCTTTGTTGATCCTTCACCGCCGATGTTCTGAACCAACGGTCTA TTGCTTGGAAGGCAATAATCCTAACCGTTGGACTACAGACGCTTCGATGTTTTTATTCTTTAGTTGTGTTCAATTATATGCTCTTT GACCAATCAACTTTCAT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_197035 myb domain protein 16 [Arabidopsis thaliana]	426	1e-039
NP_001078589 myb domain protein 16 [Arabidopsis thaliana]	426	1e-039
XP_002871660 AtMIXTA/AtMYB16 [Arabidopsis lyrata subsp. lyrata]	426	1e-039
BAJ34432 unnamed protein product [Thellungiella halophila]	426	1e-039
AAF26160 putative Myb-related transcription factor [Arabidopsis thaliana]	413	3e-038

Swiss-Prot top hits (Blast detail)	Score	e value
Q7XBH4 Myb-related protein Myb4	335	2e-030
Q8GWP0 Transcription factor MYB39	313	6e-028
O49608 Transcription factor MYB32	309	2e-027
P81392 Myb-related protein 306	308	2e-027
P27898 Myb-related protein P	307	3e-027

TrEMBL top hits (Blast detail)	Score	e value
Q9LXF1 At5g15310	426	7e-040
Q9LE63 Putative Myb-related transcription factor	413	2e-038
Q6R098 MYB transcription factor	403	3e-037
A4GZI1 Transcription factor DcMYB2	402	4e-037
B9IK06 Predicted protein	401	6e-037

Arabidopsis top hits (Blast detail)	Score	e value
AT5G15310.1 ATMYB16 (MYB DOMAIN PROTEIN 16); DNA binding / transcription factor	741	1e-078
AT5G15310.2 ATMYB16 (MYB DOMAIN PROTEIN 16); DNA binding / transcription factor	426	4e-042
AT3G01140.1 MYB106 (myb domain protein 106); DNA binding / transcription factor	397	9e-039
AT1G34670.1 AtMYB93 (myb domain protein 93); DNA binding / transcription factor	361	1e-034
AT3G02940.1 MYB107 (myb domain protein 107); DNA binding / transcription factor	358	3e-034

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	2			100%

Unigene Members	Member information