RadishBase

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Information for unigene UN45601

FASTA Sequence

Unigene ID: UN45601	Length: 646	SSR
GGGAGCGGTAAGAACACTGGTTCTGCCACCTGCAAGCGTGGGTTTGTCCAGTTCTGTTATGAACCCATCAAGCAAATCATTGCCAC TTGCATGAATGACCAGAAGGACAAGTTGTGGCCTATGTTGCAGAAGCTTGGTGTCCAGATGAAGTCCGATGAGAAGGAGCTCATGG GTAAACCTTTGATGAAGCGTGTCATGCAAACGTGGCTCCCTGCAAGTACTGCACTACTTGAGATGATGATCTTTCACCTTCCATCT CCCCATACGGCACAGAGGTACCGTGTTGAGAACTTGATCATTGGGAGATGATGTCGTCTGACCCTCTGGAGGCAGGATCGCAGGCT TCAACGCTGGTGGCTGACATCAGGAAGGGGAAGGGTATGAAGGAGCAGATGACTCCATTGTCTGACTTCGAAGACAAGCTGTAAGC AGCAGCAGCAGCAGCGGCCATCAAACAAGACCACCTCTCTTTATATTTCACTCTGGTCACCTTTTGATCTCTTTGTTTTCTATTTT GTTGTTATGATGGATTGAGTATGACTTTTATCTCTGGCCATCTCTCCTTTAATACTTTTTAGTTGAGAACTGGTTTGTCAGTGTTC GCAAATATTTTACTCTTTGCAGTCTATTATTATCTTGTTTTGAT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
BAJ33766 unnamed protein product [Thellungiella halophila]	508	1e-049
XP_002894554 hypothetical protein ARALYDRAFT_892631 [Arabidopsis lyrata subsp. lyrata]	505	3e-049
NP_849818 elongation factor EF-2 [Arabidopsis thaliana]	500	1e-048
AAN31925 putative elongation factor [Arabidopsis thaliana]	500	1e-048
AAF02837 elongation factor EF-2 [Arabidopsis thaliana]	500	1e-048

Swiss-Prot top hits (Blast detail)	Score	e value
O23755 Elongation factor 2	421	8e-041
Q23716 Elongation factor 2	251	4e-021
P29691 Elongation factor 2	249	7e-021
Q06193 Elongation factor 2	238	1e-019
Q6FYA7 Elongation factor 2	231	9e-019

TrEMBL top hits (Blast detail)	Score	e value
Q84R07 Putative elongation factor (Fragment)	500	8e-049
Q8H145 Putative elongation factor (Fragment)	500	8e-049
Q9ASR1 At1g56070/T6H22_13	500	8e-049
Q9SGT4 Elongation factor EF-2	500	8e-049
A9PIF0 Putative uncharacterized protein	484	6e-047

Arabidopsis top hits (Blast detail)	Score	e value
AT1G56070.1 LOS1; copper ion binding / translation elongation factor/ translation factor, nucleic acid binding	500	5e-051
AT3G12915.1 GTP binding / GTPase	456	7e-046
AT1G06220.2 MEE5 (MATERNAL EFFECT EMBRYO ARREST 5); GTP binding / GTPase/ translation elongation factor/ translation factor, nucleic acid binding	119	8e-007
AT1G06220.1 MEE5 (MATERNAL EFFECT EMBRYO ARREST 5); GTP binding / GTPase/ translation elongation factor/ translation factor, nucleic acid binding	119	8e-007
AT5G25230.1 elongation factor Tu family protein	119	8e-007

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	2			100%

Unigene Members	Member information