Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN45602

FASTA Sequence
Unigene ID: UN45602Length: 1101 SSR 
ACTTTTCTTTTCACTTTCCCGCTCTCGTTTTCAAGCTGCTTCTTTATTCTCTCTCTCTCTCTTCGATTTAGGGTTCGTTTAGATTC
ATTAGTTCCTTCACCAAACCTTCGGATCTTGTTCTAAATTCTCTTAACGGTAAAAGAATCTTTTCTCGATTCGACCGCAGATCTAG
GAGACTAAGTTGTAATCTCTATTCGAAAAAATTTAAAAGCTTCTCTCCGTCTTTTTTGTTTAGGTCTAGGAGGAGATATGGCAGGT
AAAGGCGGCAAGGGGCTTATCGCTACAAAGACTACTACTGCTGCAGCTGCTAACAAAGACAAGAAGAAATCCATCTCTCGCTCTTC
TCGTGCCGGTATTCAGGTCTCCCTCTCTCTAAACCCTAGCTTCGAGATCTTGTGTTTTGTTTGACTGCTTTGCTGTCTGCTGCGAT
GCTTAGTTTACATTCGATTTTCAGAGAGAGAGAGAGAGAGAGACATCAGTTGTTGTTTTTGCCCTGTTAGATTTTGGTTGTTTGGA
TCTAAATTTACCAGAGATCTGTCTTATAAAGACAAGCTTCAGTTTGCTTGCTGATTTGTTTTTTTTTGTCTTGTTACAGTTTCCAG
TGGGTCGTATCCATCGTCAACTCAAGGCGCGTGTTTCAGCACACGGGAGAGTTGGCGCCACCGCTGCAGTTTACGCGGCATCGATT
CTCGAGTACTTGACTGCGGAAGTTCTCGAGTTAGCTGGGAACGCGAGCAAAGATCTGAAGGTGAAGAGGATCACTCCGAGGCATCT
GCAGCTTGCGATCAGAGGAGATGAGGAGCTCGACACTCTCATCAAAGGAACAATCGCTGGAGGTGGTGTCATCCCCCACATCCACA
AGTCTCTCATCAACAAAACCACTAATGAGTGAAGTGATGAATGAGCTTCAGCTCTAGATTTATGTGCTTTTGCTTTGTGTTTTTTA
GCTTATTTGTTTTAGTCTGCTCTCTCTCTCCTGGACCATCCTCAAGTGTATATGGGCTAAATCTTAACCTCGTAGGTTTCTCTCGT
TTTTAGACTCCATTCTCTTGTGATCTTTCTAATGGCTACTAAGTACTATGATTGTTATTGGTTTTCTTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_191019 histone H2A [Arabidopsis thaliana]4815e-046
NP_001049049 Os03g0162200 [Oryza sativa Japonica Group]4743e-045
XP_002300810 histone 2 [Populus trichocarpa]4734e-045
XP_002307619 histone 2 [Populus trichocarpa]4734e-045
NP_001141633 hypothetical protein LOC100273753 [Zea mays]4734e-045

Swiss-Prot top hits (Blast detail)Scoree value
O23628 Histone H2A variant 14812e-047
Q8H7Y8 Probable histone H2A variant 14741e-046
Q9SII0 Probable histone H2A variant 24713e-046
Q8S857 Probable histone H2A variant 24661e-045
Q84MP7 Probable histone H2A variant 34571e-044

TrEMBL top hits (Blast detail)Scoree value
Q0WS87 Histone H2A4813e-046
A2XCU2 Histone H2A4742e-045
Q10RE1 Histone H2A4742e-045
A9P990 Histone H2A4733e-045
A9PG14 Histone H2A4733e-045

Arabidopsis top hits (Blast detail)Scoree value
AT3G54560.1 HTA11; DNA binding4821e-048
AT2G38810.1 HTA8 (HISTONE H2A 8); DNA binding4722e-047
AT2G38810.3 HTA8 (HISTONE H2A 8); DNA binding4722e-047
AT2G38810.2 HTA8 (HISTONE H2A 8); DNA binding4722e-047
AT1G52740.1 HTA9 (HISTONE H2A PROTEIN 9); DNA binding4516e-045

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  100%

Unigene MembersMember information