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Information for unigene UN45840

FASTA Sequence
Unigene ID: UN45840Length: 1168 SSR 
TTTTTTTTTCCTAAGAGAAAGAGAGAGAGAGAGAGAGAAGCAGAGAAGAGAGAGAGAAGCAGGAGAACAATCGGCTCTGTTTGTAA
GGATTTGTGTGTGCTTGTCTCATTTTTTTTTCCTTGATTCAACTTCATCAGAAGATCATCTTTTTATTACCCAGTGAAAGAAGATG
GGTTATATGTGTGACTTCTGTGGTGAACAAAGATCAATGGTGTACTGTCGCTCAGACGCAGCGTGTCTCTGCCTCTCCTGCGACCG
GAGTGTTCATTCCGCTAACGCATTGTCCAAGCGACATTCTAGAACACTCGTCTGCGAGAGATGCAATGCTCAGCCTGCTACAGTCA
GGTGTGTTGAAGAAAGAGTTTCCCTCTGTCAAAACTGTGACTGGTCTGGCCACAACAACAACAACAACAACAACAACAACAATTCT
TCTTCCTCGTCAAATAATCACAAGAGGCAAACCATAAGCTGCTACTCTGGTTGCCCTTCCAGCTCGGAGCTCGCTTCTATCTGGTC
TTTCTGTTTGGAGTTAGCTGGACAATCCGGTTGTGAACAAGAAATGGGGTTGATGAATATAGACGATGATGGTCAGACCAACCAAA
ACTGTAATGATGAGGATAAGAAAGATGGCGTTGCTGGTGGCTCCTCTTTAAGGCCTGAAACCAGCTCTGCAGCACCTGCAACTTCA
TCATTTCCTAAGGAGGTTAGAGTATGTGAAGATGACTTTTATGGGAACTTGGGTATGGATGAAATGGACTTGGCTCCTGAGAACTA
TGAAGAGCTCTCTGGGACAGCCTTTAACACCTCTGGAGAGCTCTTTGGACAAGGTGGAATCGATTGTCTTTTCCAGAAGCATCAAG
CAGCAGCAGCAGCAGCTCCTGAGGGAGGGAATCTGGTGCAGCCAGCTGAGAGCAATGATGATTCTTTCATGAGTTCGAAAACCGAG
CCGATCATTTGCTTCACATCGAAGCCAGCACATTCCAACAACATATCTTTCTCTGGACTCACAGGAGATAGCAGTGCTGGAGATTT
TCAAGAATGTGGTGCATCATCTTCAATGCAGATCTCAGCGAGCCACCATGGTATCCTCAACATCACAGATAACAATGCTTGCTCAC
AGTCAGTACACGTAATACGCGGTTATGCGTACAAGAGAAAAGAGCCCGCA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
ADK63401 B-box type zinc finger protein [Brassica rapa]14233e-155
NP_187422 zinc finger protein CONSTANS-LIKE 9 [Arabidopsis thaliana]12844e-139
NP_199636 zinc finger protein CONSTANS-LIKE 10 [Arabidopsis thaliana]9914e-105
XP_002865623 zinc finger (B-box type) family protein [Arabidopsis lyrata subsp. lyrata]9691e-102
XP_002302823 predicted protein [Populus trichocarpa]8122e-084

Swiss-Prot top hits (Blast detail)Scoree value
Q9SSE5 Zinc finger protein CONSTANS-LIKE 912842e-140
Q9LUA9 Zinc finger protein CONSTANS-LIKE 109912e-106
O23379 Putative zinc finger protein CONSTANS-LIKE 112733e-023
Q9LJ44 Zinc finger protein CONSTANS-LIKE 122501e-020
O22800 Zinc finger protein CONSTANS-LIKE 142464e-020

TrEMBL top hits (Blast detail)Scoree value
A1A6H1 AT3G07650 protein12843e-139
B9GTC7 Predicted protein8121e-084
C6TJY7 Putative uncharacterized protein5773e-057
B9IAW0 Predicted protein (Fragment)5567e-055
B9SF29 Transcription factor, putative4412e-041

Arabidopsis top hits (Blast detail)Scoree value
AT3G07650.1 COL9 (CONSTANS-LIKE 9); transcription factor/ zinc ion binding12842e-141
AT3G07650.2 COL9 (CONSTANS-LIKE 9); transcription factor/ zinc ion binding12842e-141
AT3G07650.3 COL9 (CONSTANS-LIKE 9); transcription factor/ zinc ion binding12842e-141
AT3G07650.4 COL9 (CONSTANS-LIKE 9); transcription factor/ zinc ion binding12842e-141
AT5G48250.1 zinc finger (B-box type) family protein9911e-107

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
111  50%
 
71  50%

Unigene MembersMember information