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Information for unigene UN45866
| FASTA Sequence |
| Unigene ID: UN45866 | Length: 534 |
SSR | | TTTTCGAAATAGGGTGCATTAACAATCTCTTCAAGGCTCAAGGCTCTTGATCCGGCCATCTGAAGAATCTGCTGAGTGTTACTCTA
CATTATAAGCGGGGGACCATGCCCAAGATCAACAAGCTAAACTCTATAAACATAAACTTTGATTAACATTTTACCTAAACCCTAAG
CACACACCTTCATAACGCCAATAATGCTTTTCTCGGAAACGTTGTTTGCCTCTACTGTCGTCTCATCTTTAAGCACTTTCCCTTTG
TGAATAAGCAACTGTTCTGCAGCAGTAACTCCCAGCACCGTCTCTATCTTCTTCTTCACATCAACAACCTGTTCAACACATATATT
AACCGTAGCGAACAAGAAATCGACAGAGGAGGCAGCGGAGGAAGGTAAGGAACGGCGGATAAGCGAGCGGAGACGGCCGGGACACG
GGGAATCATCACTGCCACAGAGGACGAAGCTGCTACTGTCATCGCCATCGAACTGGTTCTTCTTCTTCTTCTGCTACTACTCTCGT
CTTCTTCTTCTTCTCTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABY66299 DNA repair protein RAD23 [Brassica napus] | 203 | 2e-014 |
| ABY66298 RAD23-like protein [Brassica napus] | 190 | 6e-013 |
| ACF23021 ST6-40 [Eutrema halophilum] | 164 | 6e-010 |
| XP_002874994 hypothetical protein ARALYDRAFT_912116 [Arabidopsis lyrata subsp. lyrata] | 150 | 3e-008 |
| XP_002884326 hypothetical protein ARALYDRAFT_477488 [Arabidopsis lyrata subsp. lyrata] | 148 | 4e-008 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q84L31 Putative DNA repair protein RAD23-3 | 147 | 3e-009 |
| Q84L30 Putative DNA repair protein RAD23-4 | 141 | 2e-008 |
| O04616 Uncharacterized protein At4g01150, chloroplastic | 135 | 8e-008 |
| Q40742 Probable DNA repair protein RAD23 | 120 | 4e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B0FCA1 DNA repair protein RAD23 | 203 | 1e-014 |
| B0FCA0 RAD23-like protein | 190 | 4e-013 |
| B4YYA4 ST6-40 | 164 | 4e-010 |
| Q3EBD0 Putative uncharacterized protein At3g02540.2 | 147 | 4e-008 |
| Q1KUV7 Putative uncharacterized protein | 144 | 9e-008 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G02540.1 RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3); damaged DNA binding | 147 | 3e-010 |
| AT3G02540.2 RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) | 147 | 3e-010 |
| AT5G38470.1 DNA repair protein RAD23, putative | 141 | 2e-009 |
| AT5G38470.2 DNA repair protein RAD23, putative | 141 | 2e-009 |
| AT5G16090.1 INVOLVED IN: protein modification process; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin (InterPro:IPR000626), UV excision repair protein Rad23, C-terminal (InterPro:IPR014761), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) (TAIR:AT3G02540.2); Has 550 Blast hits to 550 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 338; Fungi - 37; Plants - 110; Viruses - 26; Other Eukaryotes - 39 (source: NCBI BLink). | 137 | 5e-009 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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