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Information for unigene UN45984
| FASTA Sequence |
| Unigene ID: UN45984 | Length: 495 |
SSR | | TTTTTTCTTCGCTGGAGTAATAGTAGTAGGTCAGGATCGTAGCTGAGAAGAAGAAGAAGAAGAAGAAAGAAAGATGGGAGATAATA
AAGTAAGTGGAACGACAAAGACACCTGCTGATTTCCTCAAATCCATCCGTGGCAGACCCGTTGTTGTCAAGCTCAACTCTGGTGTC
GATTATCGAGGCATTCTTGCTTGTCTTGATGGCTATATGAACATAGCAATGGAGCAGACAGAAGAGTATGTTAACGGCCAGCTCAA
GAACAAATACGGCGATGCCTTTATCCGTGGAAACAATGTTCTTTACATCAGTACAGTCAACACACCTTTGGCCGACGGAGCTTAGA
CCCCTTCCTCATGCATCATCATCATCAGCAATGGCTACCTTCTTTGTTCTCTTTCTAAAACAACTCTTGCACCTGACGAATGCCAT
GTATCAAAGATGTTTGTTTTTCATAAAAATGAATTTTTTTTTATAAGCATGTTAACTGCAGTCCC
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| GenBank top hits (Blast detail) | Score | e value |
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| NP_191540 U6 snRNA-associated Sm-like protein LSm6 [Arabidopsis thaliana] | 414 | 3e-039 |
| AAM63434 U6 snRNA-associated Sm-like protein [Arabidopsis thaliana] | 411 | 7e-039 |
| XP_002876525 hypothetical protein ARALYDRAFT_486445 [Arabidopsis lyrata subsp. lyrata] | 411 | 7e-039 |
| XP_002534408 small nuclear ribonucleoprotein f, putative [Ricinus communis] | 406 | 3e-038 |
| XP_002311269 predicted protein [Populus trichocarpa] | 404 | 4e-038 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P62312 U6 snRNA-associated Sm-like protein LSm6 | 340 | 1e-031 |
| P62313 U6 snRNA-associated Sm-like protein LSm6 | 340 | 1e-031 |
| A8NHT8 U6 snRNA-associated Sm-like protein LSm6 | 282 | 6e-025 |
| B0DWN3 U6 snRNA-associated Sm-like protein LSm6 | 281 | 8e-025 |
| Q4PG71 U6 snRNA-associated Sm-like protein LSm6 | 265 | 5e-023 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9M1Z3 Putative U6 snRNA-associated Sm protein | 414 | 2e-039 |
| Q8LCS5 U6 snRNA-associated Sm-like protein | 411 | 4e-039 |
| B9T839 Small nuclear ribonucleoprotein f, putative | 406 | 2e-038 |
| A9PAM0 Predicted protein | 404 | 3e-038 |
| A9PAG8 Predicted protein | 402 | 5e-038 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT3G59810.1 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative | 415 | 2e-041 |
| AT2G43810.1 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative | 393 | 8e-039 |
| AT2G43810.2 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative | 393 | 8e-039 |
| AT4G30220.1 RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) | 181 | 3e-014 |
| AT2G14285.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Small nuclear ribonucleoprotein SmF (InterPro:IPR016487), Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) (TAIR:AT4G30220.1); Has 585 Blast hits to 585 proteins in 157 species: Archae - 67; Bacteria - 0; Metazoa - 219; Fungi - 139; Plants - 63; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). | 134 | 9e-009 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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