RadishBase

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Information for unigene UN46013

FASTA Sequence

Unigene ID: UN46013	Length: 700	SSR
TTCCTCGGCTCATCTCTCGTCTCTCTCTCTCCGCGATCAGATCGCAAAACCAAAATCGTATCGAATCCACGACTTTGATCAAATAT GACCCTTGGCTCCGGAGGGACGAGTGTCGTTGTCCCAAGGAATTTCCGGTTGCTGGAGGAGCTTGAACGTGGGGAGAAAGGTATTG GAGATGGAACTGTTAGCTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGCACTATCATTGGTCCTCACAAC ACCGTTCATGAAGGTAGGATCTATCAGTTGAAGCTCTTTTGTGACAAAGATTACCCTGAGAAACCTCCCACTGTCCGGTTCCATTC ACGTATCAACATGACTTGTGTCAACCATGAAACAGGAGTTGTGGATCCTAAGAAGTTCGGTCTTCTTGCCAACTGGCAAAGGGAGT ACACAATGGAAGATATACTGGTACAGCTGAAGAAAGAAATGACTGCCTCGCATAACCGTAAGCTTGTTCAACCTCCAGAAGGCACT TGCTTCTAGTAGCTTCTGAAATCTTCTTCTGCTTTGCTTAAAAAAATATTTGCCCCCTTCTAACACTAAAGTATGTATCTGGGGGT AATCCATTGTCGTTCTCAAGCTTTTTATGAATTATAAAATGGTCTCTGGATGGTGGTTATGTTGTTCGATTGATCATCTGAAGTTT CACTGTTTAATC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_566968 ubiquitin-conjugating enzyme E2 variant 1D [Arabidopsis thaliana]	775	2e-080
XP_002881424 hypothetical protein ARALYDRAFT_482581 [Arabidopsis lyrata subsp. lyrata]	762	6e-079
XP_002323400 predicted protein [Populus trichocarpa]	759	1e-078
ADU56174 ubiquitin-conjugating family protein [Jatropha curcas]	756	3e-078
XP_002309399 predicted protein [Populus trichocarpa]	754	5e-078

Swiss-Prot top hits (Blast detail)	Score	e value
Q9SVD7 Ubiquitin-conjugating enzyme E2 variant 1D	775	8e-082
Q9SJ44 Ubiquitin-conjugating enzyme E2 variant 1C	729	2e-076
Q93YP0 Ubiquitin-conjugating enzyme E2 variant 1A	597	4e-061
Q9CAB6 Ubiquitin-conjugating enzyme E2 variant 1B	592	1e-060
Q54D06 Probable ubiquitin-conjugating enzyme E2 variant	459	4e-045

TrEMBL top hits (Blast detail)	Score	e value
A9PBP9 Predicted protein	759	9e-079
A9PCP1 Predicted protein	754	3e-078
C8CP48 Ubiquitin-conjugating enzyme variant	752	6e-078
Q3HVN0 Ubiquitin-conjugating enzyme family protein-like protein	750	1e-077
B3TLV8 Ubiquitin-conjugating enzyme family protein	749	1e-077

Arabidopsis top hits (Blast detail)	Score	e value
AT3G52560.1 UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase	776	6e-083
AT3G52560.2 UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase	764	1e-081
AT2G36060.1 ubiquitin-conjugating enzyme family protein	730	1e-077
AT2G36060.2 ubiquitin-conjugating enzyme family protein	723	8e-077
AT2G36060.3 ubiquitin-conjugating enzyme family protein	714	9e-076

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	2			100%

Unigene Members	Member information