 |
Information for unigene UN46046
| FASTA Sequence |
| Unigene ID: UN46046 | Length: 1013 |
SSR | | GGGAGAGAGAACCCAACACATTCAATTTGTCTCCGGCGAGATCTCATTTCTGATCCTTCACGGTGGCGTCGACGTCAGGGCAACAA
CAAGAAGGTCTCTCAAGAAGGAAGCCTCCATCATCATCATCATCATCATCATCATCATCATCTCCTCCTTCCTCTGATTCGCCTCT
ACTACGAACTCCCTCGGCGAGGAAAGCGAGCCCCGAGTTTCCCTTTTATCAGCAGAACTGGTTCATCGCTCTCCTCTTCCTGATGG
CTATGGGATTCTTCTGCCTCGCTCTCTTCCTTTACCTCGGCCTTGATCCCGATTCCGGCTACACCTCTGCCTCCGCCGCAGCGCCT
TCCGGTAAAGAAGGCGTCGAGGTAAGTTATGGGAGTGCGATAAAGCTGATGCACGAGAAGACGAAGTTTCGTCTGCATTCTCACGA
TGTGCCTGGGACAAAAGCCAAGCAAGGTGATGCCATCAAGAATGGAGAAACCGTTAGATTGCAGCACATGAAGACCAGAAAATGGC
TCCACAGTCACCTACATGCATCCCCTATCTCAGGAAACTTAGAGGTTAGCTGCTTTGGAGATGATTCAAATTCCGATACTGGGGAT
CACTGGAAGCTTACAATCGAAGGTAGTGGTAAGACATGGAAACAAGACCAAAGAGTCCGTCTTCAACACATTGACACTAGTGGCTA
CCTCCATAGCCACGACAAGAAGTACCAACGCATTGCCGGTGGTCAGCAAGAGGTCTGTGGAATCCGGGAGAAGCGGGCTGATAATG
TTTGGTTGGCAGCAGAGGGAGTCTACCTTCCCGTTAATGATAGTAGCAAGTAAGGTAAAGAGTTGTGTTAACTTCTCTCGAGGACT
TTGAATCTCATCTTTTACTCTCTAAACTTGAAAACAAGAAAATAGAAAATATATGTATTTTGCTAATCTGCGATTGATGATGATAC
TGTAGTCACGCGAATTTACATATTGTTTTGCTAGGTATTTTGCATTAATCTTCTTTTTTTCTTCCTT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_565585 stromal cell-derived factor 2-like protein [Arabidopsis thaliana] | 667 | 1e-067 |
| 3MAL Chain A, Crystal Structure Of The Sdf2-Like Protein From Arabidopsis | 667 | 1e-067 |
| XP_002878825 MIR domain-containing protein [Arabidopsis lyrata subsp. lyrata] | 661 | 6e-067 |
| AAM65625 unknown [Arabidopsis thaliana] | 654 | 4e-066 |
| CAN63540 hypothetical protein VITISV_016626 [Vitis vinifera] | 619 | 4e-062 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q93ZE8 Stromal cell-derived factor 2-like protein | 667 | 5e-069 |
| Q54P23 Stromal cell-derived factor 2-like protein | 276 | 1e-023 |
| Q99470 Stromal cell-derived factor 2 | 226 | 7e-018 |
| Q9DCT5 Stromal cell-derived factor 2 | 225 | 9e-018 |
| Q3SZ45 Stromal cell-derived factor 2 | 223 | 2e-017 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A5BIP5 Putative uncharacterized protein | 619 | 3e-062 |
| C6TG38 Putative uncharacterized protein | 617 | 5e-062 |
| C6TNG6 Putative uncharacterized protein | 617 | 5e-062 |
| B9RNW9 Stromal cell-derived factor 2, putative | 615 | 8e-062 |
| C6TJ58 Putative uncharacterized protein | 614 | 1e-061 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G25110.1 SDF2 (STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN PRECURSOR) | 668 | 3e-070 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
