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Information for unigene UN46094

FASTA Sequence
Unigene ID: UN46094Length: 1164 SSR 
TCATTTAAAAATGTATATGGTTCATGAAGATTTGTTACAAGCACAGAACAAAAGTGTATATGTAGTTGTTATACCACAGCGACTTT
TGAGTTTTTTTACAGTCTATTTACAACAAAAGTGTATACAAGAGGGAGAGAGAGAGAGAGAGAGCTAGAAGAGAAGGAGGCAGAGG
AAGATGCAAAAGAAGAAGAAAATGGATACCCGATTAAGAGACTTCTCATGATGCATCATCCTCTGGTTTTGTTGGTAAGGCTGAGC
TATCGCGTTCGTGAAAGTTCCGAATATCCTGGTGTAGACCATGTCCCCAAAAATCCCGATCACCGGGTACAGCAAGCTCATCATCA
CCGCGTTGGCAAGGTCTGTCGATTCAGTTGTGGTGGTGAAGCCACGGGAGGAGTATCGGTGGTGGTTGTGAAACGTTGGAAACATT
GTTCGGTGTTGTCGCAAAGGTAAATCTGGAGTGGTGGGAGTGTTTGATGGAAAAGGTCTCCGAGGTATTGAGTCTTGTTGTTCCTT
GGAGTCAAAGGATGGAGAAGAGATGCCTCTTCCGTAGAGAGGAACCAATGAGGTGATGGCAATGTTGGATTTGCAGACAGGGAAGT
TGTTGTTGTTGTTGTTGTTGTTCTGGTGGTGATCGATGGAGAGAGAAGAAGAGAGCTGAACATGGAGCCACTTGTAGATGCAAGGC
CAGCAGAAAAGGTGTCCGCAGAGAGTGACCACCGGATCAAGAGCTATGTCTAGACAGATGTTGCAATCAAAGCATCCGCTGCTTTC
GTTGGATTGAGATCCTGTTGGAACCGTGACGAGATTAGGTTTTTGTTTGACCGTGGAGCCATCATCAGAGCTGAAGAAGTTTCCTT
CCATGGGAGGCAAAAGTCGCTAAATCTACAAACCAAAATAACTTAATTTCTTTGATTTGTGACTTCTAATCAAAATCTCTAGAGAT
CGATCTCTTTTTGCTTAAACTATGCAACGGGAAAACATTATAGATCAGAATAATCAAAATAGATAAACAGGGATTCAGATTTCAAT
TCTCTAAATGAGAATCCAATCCACAGCAAAAAAACATATGATGATGATGAAGAGAGAACCTACCGAATCGATCGCCCCGAGGGAGA
GGAGTTTCAGGGAATTGGATGATGTTAATTCGCTCTATTAAGTCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002869561 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]8401e-087
NP_194477 E3 ubiquitin-protein ligase RMA3 [Arabidopsis thaliana]8203e-085
CAB43879 putative RING zinc finger protein [Arabidopsis thaliana]7692e-079
XP_002329096 predicted protein [Populus trichocarpa]4063e-037
XP_002864274 hypothetical protein ARALYDRAFT_918469 [Arabidopsis lyrata subsp. lyrata]3741e-033

Swiss-Prot top hits (Blast detail)Scoree value
Q8GUK7 E3 ubiquitin-protein ligase RMA38201e-086
O64425 E3 ubiquitin-protein ligase RMA12582e-021
P93030 E3 ubiquitin-protein ligase RMA22545e-021
Q6R567 E3 ubiquitin-protein ligase RMA1H12421e-019
Q5ZIR9 RING finger protein 1852106e-016

TrEMBL top hits (Blast detail)Scoree value
B9N1I4 Predicted protein (Fragment)4062e-037
B9SNN5 Rnf5, putative3263e-028
B6UIC4 Ring domain containing protein2772e-022
C0HFZ0 Putative uncharacterized protein2772e-022
C5YCL1 Putative uncharacterized protein Sb06g0234302753e-022

Arabidopsis top hits (Blast detail)Scoree value
AT4G27470.1 zinc finger (C3HC4-type RING finger) family protein8217e-088
AT4G03510.1 RMA1; protein binding / ubiquitin-protein ligase/ zinc ion binding2581e-022
AT4G03510.2 RMA1; protein binding / ubiquitin-protein ligase/ zinc ion binding2581e-022
AT4G28270.1 zinc finger (C3HC4-type RING finger) family protein2544e-022
AT1G19310.1 zinc finger (C3HC4-type RING finger) family protein1962e-015

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  100%

Unigene MembersMember information