RadishBase

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Information for unigene UN46095

FASTA Sequence

Unigene ID: UN46095	Length: 983	SSR
GGACGTATCCTTATATCCAAACACATCTCATCCCTCTTTGAGACTTCTTCCTTCTTCTTCCTCGCCGATCGCAACTTCCGTCTCCT CTCAGCAAATCCTTTAACGACAATGGATTACGACTTCAGGAACAAGTCAGGTCCCTCCTACGGCCGCCCTATGTACCCATCTCCTT CTCCATCATCTATGTACACCGGTCCTCCCGGATACCCAAAGATCGGTGGCGGCCAACCGTTTTTCCCTCCGCCGCCAGAGAGAAAC CCGTCGTTTCAACACAACCCCTCTTCATCTGGATTAGGAATCAAGGTGACTCTCAAGCCTGACTATCTTATCACTCCTCCGCCTCC GTTGTTGCCTCGAGTTGGAGATGTTCCTCGGAGCAGCTTTCAGTTCGATTTCGGACTAGAAAGGAAGGTTCTTGCTGAGGCAGAGA AGGATAACCCGGATTGGAGCAAGTTTGGGTCCGACCATCCTCCTCCTCCTCCTCCACCGGCTAACTTTTCGCAACCGCCGCCGGCT AACTTTGCACAACCACCACCCGCACATTCAATGGGTGTAGATCCTGTAGTGATGAAATATGCTGGGCTAAACCGAGAAGCTGTCAA CATCGCTGTTGCAAACTATGGTGATAATCCCACAAAGGTTCATGAATTTGCAAATGGGTTCAGTGCGATAAGGGAGATGGGGTTCC CAACGAACGCTGTTGCAGATGCTCTCTTCATGTTCGAGAACGACACTGAGAAGGCATTGTCTCATTTGCTCCATGGTTCTTCTTGA ACTTTTTTAGACTTTCAAATTATCCTCCTTCTATAGTGTGTATAAGTAAAACATCATATTTGATAACATAAAAGATTGACAAAACT ACAGACATTGTTTTTTCTTTTACTTTGTGTAAATGGGTGTGATTTGTTTTGGGTGGGGACAAAACTTTGTCAGTGAAGATATCTAT TTCACTGCCTCGACTTAAAAGCAACTGATGTTTGATG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002864236 hypothetical protein ARALYDRAFT_918411 [Arabidopsis lyrata subsp. lyrata]	809	4e-084
NP_568790 Ubiquitin-associated/translation elongation factor EF1B protein [Arabidopsis thaliana]	754	9e-078
AAK55708 AT5g53330/K19E1_13 [Arabidopsis thaliana]	751	2e-077
BAB09795 proline-rich cell wall protein-like [Arabidopsis thaliana]	464	4e-044
BAJ96632 predicted protein [Hordeum vulgare subsp. vulgare]	448	3e-042

Swiss-Prot top hits	Score	e value
No hits found

TrEMBL top hits (Blast detail)	Score	e value
Q8LG11 Proline-rich cell wall protein-like	754	6e-078
Q93VW9 AT5g53330/K19E1_13	751	1e-077
Q9FK09 Proline-rich cell wall protein-like	464	3e-044
Q5WA93 Os06g0160400 protein	423	1e-039
B8B397 Putative uncharacterized protein	422	2e-039

Arabidopsis top hits (Blast detail)	Score	e value
AT5G53330.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940); Has 28 Blast hits to 28 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 2; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).	762	4e-081

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	3			43%


9	4			57%

Unigene Members	Member information