RadishBase

| | | |

Information for unigene UN46255

FASTA Sequence

Unigene ID: UN46255	Length: 995	SSR
GGTAGGAATTTTCAGTTTCCTGTTTTAAGCGAGCCCCCACAATCTTTTCTGACAACAATGGAAGAGTATATTAAAGAAGCACCACG TGCTGTTGATGCCCCAGCTGAACCACTGCTTCTAACTTATAGGCCAGACGATGGACTCGAAGATACGGAACCGCCTCATGAAGAAC GTGAACTTGTGTTGCCTTCAGATGATGTGGTTCTTGTATCTGAAGAGACAGAACATTCTCCTCCGCCTCCTCCGACTTCAGCTACC ACTCAGTCTCAGAACATCATTGATACAGATGATTTACTGGGTCTGAACACTGCCGCTCCTGATGCATCGGCGATCGAGGACCAAAA TGCACTTGCTTTAGCCATAATCTCAACTGATGGTGGAAACTCTTCAACGCCTAGTTCTTTCCAAGCAAACGATTACGACCCTACAG GATGGGAGCTTGCTCTGGTAACAACACCAAGCAACGATATCTCTGCAGCCACCGATAGGCAATTGGCTGGTGGATTAGACACGCTT ACACTGAACAGTCTATACGATGATGGAGCCTACATAGCCTCCCAACGCCCTGTTTACGGTGCACCAGCTCCCAACCCATTTGAAGT TCACGATCCTTTTGCAACGTCCACTGGGATTACACCACCTCCGCAACCAGCTGTGAACAACCCCTTTGGTGTTTACCAGCCAACTT ATGGGCAGCAGCAGCAGCATCAACTACAGCTAGCATTAGCACCAACCCCCCAAGCCAATAACAGTAGTAATCCATTTGGTAATTTT GGGGAATTCCCGGTTAACCCGGTTTATCAGCAGCCAAATACAAGCGGGTTTGGTGATTTTGCGGTTAATCAGCATAATAATCCGTT CCACAGCACTGGTTTCATCTGATTATATTTTCAAATTTGTATTTCATTGGTTTTTTTTGTGGAGTGGAGGGAGAGAGAGTGTGTGA ATTGGTTTTATTTGTGAGTAATATAATCAACATGATTGGTTTGATCTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
AAM67368 unknown [Arabidopsis thaliana]	1121	2e-120
XP_002875082 hypothetical protein ARALYDRAFT_904366 [Arabidopsis lyrata subsp. lyrata]	1120	3e-120
NP_565267 putative clathrin assembly protein [Arabidopsis thaliana]	1119	4e-120
AAD12692 expressed protein [Arabidopsis thaliana]	1119	4e-120
CAA71879 hypothetical protein 194 [Arabidopsis thaliana]	862	3e-090

Swiss-Prot top hits (Blast detail)	Score	e value
Q8LBH2 Putative clathrin assembly protein At2g01600	1119	2e-121
P94017 Putative clathrin assembly protein At1g14910	862	1e-091
Q9LVD8 Putative clathrin assembly protein At5g57200	283	2e-024
Q8VYT2 Putative clathrin assembly protein At4g25940	249	1e-020
Q9LHS0 Putative clathrin assembly protein At5g35200	237	4e-019

TrEMBL top hits (Blast detail)	Score	e value
B9SP68 Clathrin assembly protein, putative	750	2e-077
B9HJD6 Predicted protein	709	1e-072
B9HW44 Predicted protein	674	1e-068
B7ZXB5 Putative uncharacterized protein	555	7e-055
B4FLN4 Putative uncharacterized protein	541	3e-053

Arabidopsis top hits (Blast detail)	Score	e value
AT2G01600.1 epsin N-terminal homology (ENTH) domain-containing protein	1120	1e-122
AT1G14910.1 epsin N-terminal homology (ENTH) domain-containing protein	862	1e-092
AT5G57200.1 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	283	1e-025
AT4G25940.1 epsin N-terminal homology (ENTH) domain-containing protein	277	7e-025
AT5G35200.1 epsin N-terminal homology (ENTH) domain-containing protein	260	7e-023

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	2			100%

Unigene Members	Member information