RadishBase

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Information for unigene UN46352

FASTA Sequence

Unigene ID: UN46352	Length: 1006	SSR
GGACAGATGGGGAGCGTAAGAATACCACCACCGTCTTCTTCATCGACACATCTTATCCACAACCTTCTCCGACATCCCGAACCACC GTCTTCCTTCGGTGTCTTCATCAGACCCTTTCGCTTCTCCGCTATAACATGTCAATCCAGCCGCGGTAACAAGCCTCGCTTTCAAT CAATCTCTTCAAAGCTTCCGCTTCCTTTCCACTCTACTTCTTCTTCTTCTTCTTCACTCGTAGCGAAATCCTTCTCTGCCATCGAT GAGCCGGACCTCCTCGGAGAAGAAGATGAGAGCGAGGAAGACGATTACAACGAAGAAAAAGACGAAGGAGAAGAGCTGGACAGTGG AATGGTATCCGCGAGAGGAAGTGAGGAGGGCTACGAGGAAGGTTTAGGAGAGAAGGAGGAGGAGGATAAGATAGAGAAGATGAAGA AGAAGGCTCGGGGCTCCGGTTTGAAGTTGACTATTAAGGAGAAGAAGGAACTTGCTTCATACGCCCATAGTCTTGGTGACAAATTG AAATGTCAACTCGTCGGAAAATCTGGCGTTACTGATTCGGTGGTTTTCTCATTCCTCGAGACTCTAGAGAAGAACGAGCTCTTAAA GGTGAAGATACGCAAGACGTCTCCAGAGGAGATGGAGGACGCTGTTATGCATTTGGAGGAAGCCACTGGTTCTGTTGCTGTTGGCC AAATCGGGAGGACTGTGATATTGTACCGGCCTAGTCCCACCAAAATGAAGGCAGAGGAGAAGAAGAAAGAAGTTGAGAGATTGTTG ATTAGAAGGAGACAGAAGTTCTCAAACTCGCGACCCACTAGACCTTTTAGGAGAGAGTATTCAGAGAGACCTGATGGACGTGGACG CAGAGGAGGAAGTAGAATTGCAACGCCTTGATTTATTGTTATTATTAATTTGCGCGGTTTGTTTTTTTATTATCACCATCACCTAA GAAGACCAGTTCTTTGCTTTTATATGCATTTTCTTCAAAAAATACAATCTCGTTGATCTG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_195615 putative RNA-binding protein containing KH domain protein [Arabidopsis thaliana]	999	4e-106
XP_002868881 hypothetical protein ARALYDRAFT_490673 [Arabidopsis lyrata subsp. lyrata]	982	3e-104
NP_849521 putative RNA-binding protein containing KH domain protein [Arabidopsis thaliana]	900	1e-094
XP_002265886 PREDICTED: hypothetical protein [Vitis vinifera]	489	5e-047
NP_179731 RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]	423	2e-039

Swiss-Prot top hits (Blast detail)	Score	e value
P0AGK6 RNA-binding protein yhbY	123	6e-006
P0AGK5 RNA-binding protein yhbY	123	6e-006
P0AGK4 RNA-binding protein yhbY	123	6e-006
P0AGK7 RNA-binding protein yhbY	123	6e-006

TrEMBL top hits (Blast detail)	Score	e value
Q9SVI9 At4g39040	999	2e-106
Q3E9N8 Putative uncharacterized protein At4g39040.2	900	7e-095
Q9SJU2 Putative uncharacterized protein At2g21350	416	1e-038
C6TB79 Putative uncharacterized protein	408	8e-038
A5APQ9 Putative uncharacterized protein	399	9e-037

Arabidopsis top hits (Blast detail)	Score	e value
AT4G39040.1 RNA binding	999	1e-108
AT4G39040.2 RNA binding	900	4e-097
AT2G21350.1 RNA binding	423	9e-042

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	4			100%

Unigene Members	Member information