Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN46404

FASTA Sequence
Unigene ID: UN46404Length: 828 SSR 
GGATTCGTCTCTTACAAATCATCAAGTATACATTTGATCGTTTCTTATTCTCATCAGCAGAGCAAACAAAACTTTTTTCGATAACT
ATGGCAGAGGAAACCAAGAACATTGAGGTGCCAAAGGTAGAGTCGGAGGAATCATCAGCAGGGGCCACAGAGGTTACAGATCGTGG
ACTGTTCGATTTCTTGGGGAAGAAGAAAGATGAAACAAAACCAGAGGAGACCGCCATAGCGTCTGAGTTTGAGCAAAAGGTTCACG
TCTCGGAGCCGGCGCCTGAGGTTAAACACGAGGAAGAAGAAGAAGAGAAGAAGCATCATAGTTTCCTCGAGAAGCTTCACCGCAGC
GACAGCTTTTCAAGCTCCTCAAGCGAGGAAGAAGGCGAAGATGGTGTGAAGAGGAAGAAGAAGAAGGACAAGAAGAAGGTAACTAC
TGAAGGAGGAGAGGTGAAGACAGAGGAGGAGGAGAAGAAAGGGTTTATGGATAAGCTGAAGGAGAAGCTTCCTGGACACGGAAAGA
AGCCTGAAGATGCTCCACCGGCACCGGTTGTTGCTCCTCCGGTGGAGGAAGCGCCTCATTCACACGACACCGTCTAGACCTCTCTG
GTAATTGGAAACCCTCTCGTGTGTGTGTGTGTGTGTGTGTCTCGCAGCTCCCTGGTGTGAATTGTGTGTAATGTGGCTTGTGGAAA
GTTCCAGACCTTTTGGATTGTAAATGTCAGACGTTGATTCTGTCTTCTTTCGTTTTTGTTATGATTCTGATTTGCTTTATCTATCT
CTCTGTGTACCTCATGATCTTACTTGGCTTTGAATGAATACTTATTGTTTGACC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
CAA64428 pollen coat protein [Brassica oleracea]6543e-066
ABV89609 pollen coat protein [Brassica rapa]6453e-065
ABD95987 dehydrin [Brassica juncea]5881e-058
ABV56004 dehydrin protein [Capsella bursa-pastoris]4992e-048
XP_002889065 hypothetical protein ARALYDRAFT_895496 [Arabidopsis lyrata subsp. lyrata]4562e-043

Swiss-Prot top hits (Blast detail)Scoree value
P42759 Dehydrin ERD103672e-034
P42763 Dehydrin ERD143125e-028
Q9XJ56 Phosphoprotein ECPP442202e-017
P46524 Dehydrin COR4102086e-016
P31168 Dehydrin COR472032e-015

TrEMBL top hits (Blast detail)Scoree value
Q39386 Pollen coat protein6542e-066
A8IXD7 Pollen coat protein6452e-065
A9X5B5 Dehydrin5888e-059
C6EQ93 Dehydrin protein5053e-049
D3YBF7 Dehydrin b3002e-025

Arabidopsis top hits (Blast detail)Scoree value
AT1G20450.1 ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10); actin binding3672e-035
AT1G20450.2 ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10); actin binding3412e-032
AT1G76180.1 ERD14 (EARLY RESPONSE TO DEHYDRATION 14); calcium ion binding3125e-029
AT1G20440.1 COR47 (COLD-REGULATED 47)2032e-016
AT4G38410.1 dehydrin, putative1315e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  100%

Unigene MembersMember information