RadishBase

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Information for unigene UN46407

FASTA Sequence

Unigene ID: UN46407	Length: 806	SSR
GGGATTTTCCTCGGCTCATCTCTCGTCTCTCTCTCTCCGCGATCAGATCGCAAAAGCAAAATCGGATCGAATCCACGACTTTGATC AAATATGACCCTTGGCTCCGGAGGGACGAGTGTCGTTGTACCGAGGAATTTCCGGTTGCTGGAGGAGCTTGAACGTGGGGAGAAAG GTATTGGAGATGGAACTGTTAGCTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGCACTATCATTGGTCCC CATAACACCGTTCATGAAGGTAGGATCTATCAGTTGAAGCTCTTTTGTGACAAAGATTACCCTGAGAAACCTCCCACTGTCCGGTT CCATTCACGTATCAATTTGACTTGTGTCAATCATGAAACAGGAGTTGTGGACCCTAAGAAGTTCGGTCTTCTTGCCAACTGGCAAA GGGAGTACGCAATGGAAGATATACTGGTACAGCTGAAGAAAGAAATGACTGCCTCGCATAACCGTAAGCTTGTTCAACCTCCAGAA GGCACTTGCTTCTAGTAGCTTCTGAAATCTTCTTCTGCTTTGCTTAAAAAAATCTTTGCCCCCTTCTAACACTAAAGTATGTATTT GGGGGTAATCTCAAGCTTTTTATGATTAAAAAATGGTCTGTTCGATTGATCATCTGAAGTTTCACTGTTTAATCCATCTGTGTTCA ATCTTTTGAAAACGCTACATATACGATTTCACTGTTTAACATTGACCTTGTTGGTCGTCTCTACCCGTGAGGTTTGCTTCTTGTGG TCAATGGGTTAATGTCAAAGGTTTTTTAACCT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_566968 ubiquitin-conjugating enzyme E2 variant 1D [Arabidopsis thaliana]	767	2e-079
XP_002881424 hypothetical protein ARALYDRAFT_482581 [Arabidopsis lyrata subsp. lyrata]	754	6e-078
XP_002323400 predicted protein [Populus trichocarpa]	751	1e-077
ADU56174 ubiquitin-conjugating family protein [Jatropha curcas]	748	3e-077
XP_002309399 predicted protein [Populus trichocarpa]	746	5e-077

Swiss-Prot top hits (Blast detail)	Score	e value
Q9SVD7 Ubiquitin-conjugating enzyme E2 variant 1D	767	9e-081
Q9SJ44 Ubiquitin-conjugating enzyme E2 variant 1C	721	2e-075
Q93YP0 Ubiquitin-conjugating enzyme E2 variant 1A	589	4e-060
Q9CAB6 Ubiquitin-conjugating enzyme E2 variant 1B	584	1e-059
Q54D06 Probable ubiquitin-conjugating enzyme E2 variant	460	4e-045

TrEMBL top hits (Blast detail)	Score	e value
A9PBP9 Predicted protein	751	1e-077
A9PCP1 Predicted protein	746	4e-077
C8CP48 Ubiquitin-conjugating enzyme variant	744	6e-077
B7FNB3 Putative uncharacterized protein	743	8e-077
Q3HVN0 Ubiquitin-conjugating enzyme family protein-like protein	742	1e-076

Arabidopsis top hits (Blast detail)	Score	e value
AT3G52560.1 UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase	768	6e-082
AT3G52560.2 UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase	756	2e-080
AT2G36060.1 ubiquitin-conjugating enzyme family protein	722	1e-076
AT2G36060.2 ubiquitin-conjugating enzyme family protein	715	9e-076
AT2G36060.3 ubiquitin-conjugating enzyme family protein	706	1e-074

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	4			100%

Unigene Members	Member information