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Information for unigene UN46470

FASTA Sequence
Unigene ID: UN46470Length: 1042 SSR 
GGATCGCCTCTTGGAAACCTAGCGCAGTCGCCATGGACGAATCCGCCATAAAAGGTCTGGAATTGAATGGTTGTGAGGCAGAGATT
CGAGAAAGCCGGATTGTGGTTGAGGGATACGACACCTCTCTTCGTAGGGAAGATGTCGAAGAGGCTTTGAGAAAACATTTCGCTTC
ATGTGGAAACATAATACATGTTTATGTTCCCATTAACGAGGAAACTGATATTCCCAACAGATTTTCCTTCATTTATGTTAACGGAG
AAGACGAAGAAAAGGCGTTGAGGCTTGATGGAAGCGACATGGGAGGACGGATTTTACAAACTTATGCTTACCCGTTTCAGGAAAAT
TACCTTGATGATGTCTTGGCTACTCTGAAAGAAGCCCGTCAGACACAACGCACGTAAATTGTTCTTTATATTTTAATTTATTTGTA
TGTGTGTTGTTCTTTTGTCATGTTGTTGATAGTATTATCTCCTGCAATATTAGTTTGAAAGTTACCGGATATGACCCTTCCCTTTC
TATGGATGATGTCGAGAGCAAGCTGTGTAAACATTTCGCACCAGCTAGTTGTTTTGCGTACAGGACATGTGGTGGTCTCCAAAGGT
TTTTTTGGCTTGTATTATTATTATTCTTTTTAATGAGTTATCAGTTAATAACTAACGACTTTTTTTTAATTATTATTATTATTTAC
AGCAAAGCTTTCGTTTATCTCGTTGGAGAAGACGATGTAGAGAAGGCGCTGGAACTCAGTGGACGTTGTGTGGGAGGATTGAACAT
TGTAGTTACCCAGGTTCTGCCCAAAAAACCGATCAAGTGTGGCTACACTCGTCCACTTAATTGACTAATGAGCAGAAAGCTGATCG
AAAGCGCTATATATCTTTTATGAGGAATATCAGAAGGAGCAGAAGAATAAGACTAAACCTCTCTCTTCTTGGGAGAAGACATATAT
GCTCTTTTGTTGTATTAACTTGTGTTGCAATGCAACATTTTTCTTTTCTTTTGTCTGGATTTTTTTACTAAAATTTTATCCAAGTT
CATGCTCTGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002873095 predicted protein [Arabidopsis lyrata subsp. lyrata]2297e-017
XP_002893783 predicted protein [Arabidopsis lyrata subsp. lyrata]2297e-017
NP_195968 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]2046e-014
XP_002873093 predicted protein [Arabidopsis lyrata subsp. lyrata]1893e-012
XP_002883446 predicted protein [Arabidopsis lyrata subsp. lyrata]1875e-012

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9LZD9 Putative uncharacterized protein F12E4_2502044e-014
Q67YA0 Putative uncharacterized protein At5g035001821e-011
Q9S755 MZB10.19 protein1767e-011
Q5BPG8 Putative uncharacterized protein1732e-010
Q5XUZ6 Putative uncharacterized protein1732e-010

Arabidopsis top hits (Blast detail)Scoree value
AT5G03480.1 nucleic acid binding / nucleotide binding2042e-016
AT5G03495.1 nucleotide binding1828e-014
AT3G09160.1 RNA recognition motif (RRM)-containing protein1764e-013
AT5G53700.1 INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: nucleic acid binding / nucleotide binding (TAIR:AT5G03480.1); Has 74 Blast hits to 54 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).1739e-013
AT1G48920.1 ATNUC-L1; nucleic acid binding / nucleotide binding1666e-012

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  100%

Unigene MembersMember information