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Information for unigene UN46486

FASTA Sequence
Unigene ID: UN46486Length: 953 SSR 
GACTGCAAAAGACAACCCAAAGAGAGAATCATTAGCGAAAGAGTTGGAAGAGGAAGAATACCTTTTGAGACAATGCATTGAGAAGC
TTAAATCCGTTCAAGGGAGTAGGACTTCCCTTGTAAACCAGCTTAAAGACGCACTACGCGAACAGGAATCAGAACTGGAGTATCTG
GAAGCTCAGATTCAGGTAGCACAAGAACAAACAGAAGAAGCTCAAAACATGCAGAAACGTCTCAAGGATGAGGATTATACTCCGAA
ACCAACAACCGTCGCTCCAGGATCAGTCTCAACTGACAACAACAACGATACAAAATCTGGCCAAGCATCAAAAATGACGCCTGCTT
CAATAGCTGCGATGCTCACAGCTTCCACCTCGTCACATATGATCATGCAATCTGTTCTCTCTTCGTTCGCAGCCGAAGCAACAAAG
TCTTCTGGTCTAACCAAACCAGAGAGCACAGTTCCGGTTTCAGACAGTAACGCGTTTGTCCCTTCTTACAACAACCAGACACCCGC
CACACAAGGTCAGTACCACCATGTGATCCCTAATCCAGCAGCACCACCACAACCACAGTTCCTGAATCCGCCTGTAATGAACAATC
CTTATGGCTTTGGCAACATACCCTTAATGCCACCTGGACTTCCGCCGCCTCCACCACCACCACATATGATAGGTAATCAACAGTTT
CAGTCCAATTCAGCTCAACAACAACAACAACAACAACCTCAACAAGGTACTTACCAGCCGTCCGGAATAATGTATTACGGAGCTCC
ACACCACTCTTAAAAAAAAATAGAACGATGTTTAGCTATGTGTAGCTTTTAGATTAGTTTTTCTGACCCTTTATATCTGCTGAGTG
CTGAAATGTGGTTTGATGTTACATTTGTTGGGTCTGAGTCAATGGATAATCTGTATCACAAGCTTTTACAACAATGTAATAGTTCC
TTCTCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
AAZ66926 117M18_7 [Brassica rapa]11356e-122
NP_196568 ENTH/VHS family protein [Arabidopsis thaliana]10381e-110
ACK44519 AT5G10060-like protein [Arabidopsis arenosa]10325e-110
XP_002873435 hypothetical protein ARALYDRAFT_487831 [Arabidopsis lyrata subsp. lyrata]10325e-110
CAB92047 putative protein [Arabidopsis thaliana]10244e-109

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q4AC18 117M18_711354e-122
Q8GUK8 At5g1006010387e-111
B7U9T6 AT5G10060-like protein10323e-110
Q9LX22 Putative uncharacterized protein T31P16_5010243e-109
Q0WV48 Putative uncharacterized protein At5g100607018e-072

Arabidopsis top hits (Blast detail)Scoree value
AT5G10060.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65180.1); Has 4531 Blast hits to 4161 proteins in 412 species: Archae - 14; Bacteria - 404; Metazoa - 1999; Fungi - 666; Plants - 262; Viruses - 36; Other Eukaryotes - 1150 (source: NCBI BLink).10431e-113
AT5G65180.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10060.1); Has 3523 Blast hits to 3241 proteins in 333 species: Archae - 25; Bacteria - 251; Metazoa - 1575; Fungi - 421; Plants - 142; Viruses - 17; Other Eukaryotes - 1092 (source: NCBI BLink).5975e-062
AT5G65180.2 unknown protein5975e-062
AT3G26990.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10060.1); Has 815 Blast hits to 806 proteins in 138 species: Archae - 0; Bacteria - 10; Metazoa - 490; Fungi - 159; Plants - 81; Viruses - 1; Other Eukaryotes - 74 (source: NCBI BLink).1486e-010

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  100%

Unigene MembersMember information